Your message dated Thu, 16 Jan 2020 20:39:53 +0000 with message-id <e1isbvl-0007cp...@fasolo.debian.org> and subject line Bug#948925: fixed in pbseqlib 5.3.3+dfsg-1 has caused the Debian Bug report #948925, regarding pbseqlib ftbfs with libpbbam1.0.6 to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 948925: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=948925 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: pbseqlib Version: 5.3.1+dfsg-2.1 Severity: serious Justification: ftbfs Tags: ftbfs sid bullseye Dear maintainer, pbbam started a transition and I scheduled binNMUs for pbseqlib. However, they failed. Please investigate. Paul https://buildd.debian.org/status/package.php?p=pbseqlib Tail of log for pbseqlib on amd64: /usr/include/pbbam/BamRecord.h:19:10: fatal error: pbcopper/data/MappedRead.h: No such file or directory 19 | #include <pbcopper/data/MappedRead.h> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ compilation terminated. make[4]: *** [/<<PKGBUILDDIR>>/pbdata//../rules.mk:20: SMRTReadUtils.o] Error 1 make[4]: *** Waiting for unfinished jobs.... make[4]: Leaving directory '/<<PKGBUILDDIR>>/pbdata' make[3]: *** [makefile:19: libpbdata] Error 2 make[3]: Leaving directory '/<<PKGBUILDDIR>>' make[2]: *** [makefile:8: all] Error 2 make[2]: Leaving directory '/<<PKGBUILDDIR>>' dh_auto_build: make -j4 "INSTALL=install --strip-program=true" PREFIX_INC=.. returned exit code 2 make[1]: *** [debian/rules:31: override_dh_auto_build] Error 255 make[1]: Leaving directory '/<<PKGBUILDDIR>>' make: *** [debian/rules:25: build-arch] Error 2
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--- Begin Message ---Source: pbseqlib Source-Version: 5.3.3+dfsg-1 We believe that the bug you reported is fixed in the latest version of pbseqlib, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 948...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille <ti...@debian.org> (supplier of updated pbseqlib package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 1.8 Date: Thu, 16 Jan 2020 21:12:41 +0100 Source: pbseqlib Architecture: source Version: 5.3.3+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Andreas Tille <ti...@debian.org> Closes: 937257 940327 948925 Changes: pbseqlib (5.3.3+dfsg-1) unstable; urgency=medium . [ Helmut Grohne ] * Convert libpbseq-dev to Architecture: any. (Closes: #940327) . [ Andreas Tille ] * Add myself to Uploaders to have at least one human uploader after Afif removed himself. * New upstream version Closes: #937257 * debhelper-compat 12 * Add new Build-Depends needed for testing * Standards-Version: 4.4.1 * debian/copyright: use spaces rather than tabs to start continuation lines. * Build-Depends: libpbcopper-dev * C++14 * Detect hdf5 lib with meson * Fix installation Closes: #948925 * Remove unneeded triggers * Remove binary packages libpbdata and libpbihdf since these are header only libraries now Checksums-Sha1: 0f8a3529f2ebd67ace9977559e8cee5f4af5a02e 2429 pbseqlib_5.3.3+dfsg-1.dsc bab056887c594ed5d2c55b1164e8bef06b69979f 970424 pbseqlib_5.3.3+dfsg.orig.tar.xz 6fafc5a7f743654576233db3cee31df623099299 8844 pbseqlib_5.3.3+dfsg-1.debian.tar.xz 9529fdc74448380d545dbeb899a2c357a5f34fe1 9613 pbseqlib_5.3.3+dfsg-1_amd64.buildinfo Checksums-Sha256: 906991e1e71aee2c4c18df717ce1c1a61d19b7b98ba594e72ca4651698356fc5 2429 pbseqlib_5.3.3+dfsg-1.dsc 6a8efe8dec8e2ffc9b503ad392b06732262279451a3b2dd40a617b2309d1dcdc 970424 pbseqlib_5.3.3+dfsg.orig.tar.xz 6c42daf002eab3d767ba834a9cb905c30ceea6d4aeead54571deb9f729e773c5 8844 pbseqlib_5.3.3+dfsg-1.debian.tar.xz 421eefbb6d720ab2a745d01ecb251c7c7cb726786104b9283d67560a1bccf832 9613 pbseqlib_5.3.3+dfsg-1_amd64.buildinfo Files: f10674d3ee8ca027e33618ea0b9b91d8 2429 libs optional pbseqlib_5.3.3+dfsg-1.dsc 41bcbf16cb8a5995de099388d7559b60 970424 libs optional pbseqlib_5.3.3+dfsg.orig.tar.xz cd1f9d57094dfa4b96bc937c175ac345 8844 libs optional pbseqlib_5.3.3+dfsg-1.debian.tar.xz f93271ecef44594126f7d5a0046251fa 9613 libs optional pbseqlib_5.3.3+dfsg-1_amd64.buildinfo -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl4gxJ4RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtFenhAAkQJUmauHYp+ULwIjDwRxXN7daJDsDC0S Rr/l0SjQEmppqAqmHlXRWLUdS7tqCppEbnHWnFZLyBA4klIMq2CQtyhdjpEGKekC 9O8CVdmd4BgIwsUQC7OomwCD/lB3kVGUcMy+yslq2s7bc2wKEXqcbFykaTI0uP4E Db5jMdY3ZZlbi7cpzKq4U1NYdVdk/fnrCnfEJYxxKhCGLXxT0VRJOgwuPu38z49J rPeeWCZZ+c0RUQCbRyRtnQ45oa+kaaIsPeeYdsAJn6gf9t7Ucz2Tog+60EYcIjHY EVoXC949xO4mpTVbyfqnkKqKWhYghtTXK9oJPQVabyg6GfEg4P8vfBhwvidrBsxv EEkMRDekdQFJjkUltWs79B+MlIGQfgL6WHOcUE/30ACzC8kFLt8u8mqvqdeGaDpw jLzY7QXc/SsyE9jAybrsUBHb7YLchmmIkarDhlaTXPLtrkoOgmLtQd93xf3nZWuy R7GhmRclOAYM9NHLrS9gM00sAHBH8wfc+PSy+J+gup1JpVOcBsUUrUqf7Rz0Bytw 0joXqkcfzr1VDA4uge9sX+NilHpdClpx52ruplucMpoLCLFyFVA5tosXwLvdWXu4 8JYOdidCiLv2Spzud1mfdwWE7hR4cHMmuy5Eov+8LsSqu+g4J7PwyLXOaNd2xARX qo64T+hlKD0= =QqWN -----END PGP SIGNATURE-----
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