Your message dated Sun, 17 Nov 2019 15:49:51 +0000
with message-id <e1iwmob-00082x...@fasolo.debian.org>
and subject line Bug#942789: fixed in libbio-searchio-hmmer-perl 1.7.3-2
has caused the Debian Bug report #942789,
regarding
libbio-{db-{biofetch,gff,seqfeature},searchio-hmmer,tools-run-remoteblast}-perl:
missing Breaks+Replaces: libbio-perl-perl (<< 1.7.3)
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
942789: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=942789
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package:
libbio-db-biofetch-perl,libbio-db-gff-perl,libbio-db-seqfeature-perl,libbio-searchio-hmmer-perl,libbio-tools-run-remoteblast-perl
Version: 1.7.3-1
Severity: serious
User: debian...@lists.debian.org
Usertags: piuparts
Hi,
during a test with piuparts I noticed your package fails to upgrade from
'testing'.
It installed fine in 'testing', then the upgrade to 'sid' fails
because it tries to overwrite other packages files without declaring a
Breaks+Replaces relation.
See policy 7.6 at
https://www.debian.org/doc/debian-policy/ch-relationships.html#overwriting-files-and-replacing-packages-replaces
>From the attached log (scroll to the bottom...):
Preparing to unpack .../libbio-db-biofetch-perl_1.7.3-1_all.deb ...
Unpacking libbio-db-biofetch-perl (1.7.3-1) ...
dpkg: error processing archive
/var/cache/apt/archives/libbio-db-biofetch-perl_1.7.3-1_all.deb (--unpack):
trying to overwrite '/usr/share/man/man3/Bio::DB::BioFetch.3pm.gz', which is
also in package libbio-perl-perl 1.7.2-3
Errors were encountered while processing:
/var/cache/apt/archives/libbio-db-biofetch-perl_1.7.3-1_all.deb
The (<< 1.7.3) version constraint is based on my assumption that 1.7.3 split
up libbio-perl-perl into several independent source packages.
cheers,
Andreas
libbio-perl-perl=1.7.2-3_libbio-db-biofetch-perl=1.7.3-1.log.gz
Description: application/gzip
--- End Message ---
--- Begin Message ---
Source: libbio-searchio-hmmer-perl
Source-Version: 1.7.3-2
We believe that the bug you reported is fixed in the latest version of
libbio-searchio-hmmer-perl, which is due to be installed in the Debian FTP
archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 942...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Michael R. Crusoe <michael.cru...@gmail.com> (supplier of updated
libbio-searchio-hmmer-perl package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Tue, 29 Oct 2019 13:23:15 +0100
Source: libbio-searchio-hmmer-perl
Architecture: source
Version: 1.7.3-2
Distribution: unstable
Urgency: medium
Maintainer: Michael R. Crusoe <michael.cru...@gmail.com>
Changed-By: Michael R. Crusoe <michael.cru...@gmail.com>
Closes: 942789
Changes:
libbio-searchio-hmmer-perl (1.7.3-2) unstable; urgency=medium
.
* Remove obsolete fields Name, Contact from debian/upstream/metadata.
* Turn on the autopkgtests
* debian/control: Breaks+Replaces the old libbio-bio-perl. (Closes:
#942789)
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