Package: libopenmpi3 Version: 3.1.3-8 Severity: serious Justification: Policy 8.6
openmpi 3.1.3-8 is triggering test failure on a wide range of client packages, including combblas, dolfin and family, petsc and family, superlu-dist. dolfin and petsc (etc) leave a record of the fault, e.g. petsc https://ci.debian.net/data/autopkgtest/unstable/amd64/p/petsc/1662208/log.gz run SNES testex19 Possible error running C/C++ src/snes/examples/tutorials/ex19 with 1 MPI process See http://www.mcs.anl.gov/petsc/documentation/faq.html [ci-1546915814:12491] mca_base_component_repository_open: unable to open mca_pmix_pmix2x: /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_pmix_pmix2x.so: undefined symbol: OPAL_MCA_PMIX2X_PMIx_Get_version (ignored) [ci-1546915814:12491] [[63830,0],0] ORTE_ERROR_LOG: Not found in file ess_hnp_module.c at line 325 -------------------------------------------------------------------------- It looks like orte_init failed for some reason; your parallel process is likely to abort. There are many reasons that a parallel process can fail during orte_init; some of which are due to configuration or environment problems. This failure appears to be an internal failure; here's some additional information (which may only be relevant to an Open MPI developer): opal_pmix_base_select failed --> Returned value Not found (-13) instead of ORTE_SUCCESS hypre and scotch are unaffected. -- System Information: Debian Release: buster/sid APT prefers unstable APT policy: (500, 'unstable'), (1, 'experimental') Architecture: amd64 (x86_64) Foreign Architectures: i386 Kernel: Linux 4.19.0-1-amd64 (SMP w/4 CPU cores) Locale: LANG=en_AU.UTF-8, LC_CTYPE=en_AU.UTF-8 (charmap=UTF-8), LANGUAGE=en_AU.UTF-8 (charmap=UTF-8) Shell: /bin/sh linked to /bin/dash Init: systemd (via /run/systemd/system) LSM: AppArmor: enabled Versions of packages libopenmpi3 depends on: ii libc6 2.28-4 ii libevent-2.1-6 2.1.8-stable-4 ii libevent-pthreads-2.1-6 2.1.8-stable-4 ii libfabric1 1.6.1-5 ii libgcc1 1:8.2.0-13 ii libgfortran5 8.2.0-13 ii libhwloc-plugins 2.0.0-1 ii libhwloc5 1.11.12-1 ii libibverbs1 21.0-1 ii libnl-3-200 3.4.0-1 ii libnl-route-3-200 3.4.0-1 ii libpmix2 3.1.0~rc2-2 ii libpsm-infinipath1 3.3+20.604758e7-6 ii libpsm2-2 11.2.68-4 ii libquadmath0 8.2.0-13 ii libstdc++6 8.2.0-13 ii zlib1g 1:1.2.11.dfsg-1 Versions of packages libopenmpi3 recommends: ii openmpi-bin 3.1.3-7 libopenmpi3 suggests no packages. -- no debconf information
