Source: abyss Version: 2.1.1-1 Severity: serious Tags: ftbfs https://buildd.debian.org/status/package.php?p=abyss
... FAIL: common_kmer ================= Running main() from gtest_main.cc [==========] Running 1 test from 1 test case. [----------] Global test environment set-up. [----------] 1 test from Kmer [ RUN ] Kmer.canonicalize Common/KmerTest.cpp:18: Failure Value of: kmer Actual: AGGC Expected: canonical Which is: ATGC Common/KmerTest.cpp:30: Failure Value of: kmer Actual: TTCGG Expected: oddLengthCanonical Which is: CGAGC [ FAILED ] Kmer.canonicalize (0 ms) [----------] 1 test from Kmer (1 ms total) [----------] Global test environment tear-down [==========] 1 test from 1 test case ran. (1 ms total) [ PASSED ] 0 tests. [ FAILED ] 1 test, listed below: [ FAILED ] Kmer.canonicalize 1 FAILED TEST FAIL common_kmer (exit status: 1) FAIL: BloomFilter ================= Running main() from gtest_main.cc [==========] Running 8 tests from 2 test cases. [----------] Global test environment set-up. [----------] 6 tests from BloomFilter [ RUN ] BloomFilter.base Konnector/BloomFilter.cc:30: Failure Value of: x[b] Actual: false Expected: true Konnector/BloomFilter.cc:31: Failure Value of: x[Bloom::hash(b) % x.size()] Actual: false Expected: true Konnector/BloomFilter.cc:34: Failure Value of: x[c] Actual: false Expected: true Konnector/BloomFilter.cc:35: Failure Value of: x[Bloom::hash(c) % x.size()] Actual: false Expected: true [ FAILED ] BloomFilter.base (0 ms) [ RUN ] BloomFilter.serialization Konnector/BloomFilter.cc:55: Failure Value of: origBloom[b] Actual: false Expected: true Konnector/BloomFilter.cc:56: Failure Value of: origBloom[c] Actual: false Expected: true Konnector/BloomFilter.cc:73: Failure Value of: copyBloom[b] Actual: false Expected: true Konnector/BloomFilter.cc:74: Failure Value of: copyBloom[c] Actual: false Expected: true [ FAILED ] BloomFilter.serialization (1 ms) [ RUN ] BloomFilter.union_ Konnector/BloomFilter.cc:92: Failure Value of: bloom2[b] Actual: false Expected: true Konnector/BloomFilter.cc:109: Failure Value of: unionBloom[b] Actual: false Expected: true [ FAILED ] BloomFilter.union_ (0 ms) [ RUN ] BloomFilter.intersect Konnector/BloomFilter.cc:132: Failure Value of: bloom2[b] Actual: false Expected: true [ FAILED ] BloomFilter.intersect (0 ms) [ RUN ] BloomFilter.windowSerialization [ OK ] BloomFilter.windowSerialization (0 ms) [ RUN ] BloomFilter.windowUnion [ OK ] BloomFilter.windowUnion (0 ms) [----------] 6 tests from BloomFilter (1 ms total) [----------] 2 tests from CascadingBloomFilter [ RUN ] CascadingBloomFilter.base Konnector/BloomFilter.cc:178: Failure Value of: 2U Actual: 2 Expected: x.popcount() Which is: 1 Konnector/BloomFilter.cc:179: Failure Value of: x[b] Actual: false Expected: true Konnector/BloomFilter.cc:180: Failure Value of: x[Bloom::hash(b) % x.size()] Actual: false Expected: true Konnector/BloomFilter.cc:182: Failure Value of: 3U Actual: 3 Expected: x.popcount() Which is: 1 Konnector/BloomFilter.cc:183: Failure Value of: x[c] Actual: false Expected: true [ FAILED ] CascadingBloomFilter.base (1 ms) [ RUN ] CascadingBloomFilter.window [ OK ] CascadingBloomFilter.window (0 ms) [----------] 2 tests from CascadingBloomFilter (1 ms total) [----------] Global test environment tear-down [==========] 8 tests from 2 test cases ran. (2 ms total) [ PASSED ] 3 tests. [ FAILED ] 5 tests, listed below: [ FAILED ] BloomFilter.base [ FAILED ] BloomFilter.serialization [ FAILED ] BloomFilter.union_ [ FAILED ] BloomFilter.intersect [ FAILED ] CascadingBloomFilter.base 5 FAILED TESTS FAIL BloomFilter (exit status: 1) FAIL: Konnector_DBGBloomAlgorithms ================================== Running main() from gtest_main.cc [==========] Running 8 tests from 2 test cases. [----------] Global test environment set-up. [----------] 4 tests from GetStartKmerPosTest [ RUN ] GetStartKmerPosTest.FullReadMatch [ OK ] GetStartKmerPosTest.FullReadMatch (0 ms) [ RUN ] GetStartKmerPosTest.FullReadMismatch [ OK ] GetStartKmerPosTest.FullReadMismatch (1 ms) [ RUN ] GetStartKmerPosTest.NumMatchesThreshold Konnector/DBGBloomAlgorithmsTest.cpp:85: Failure Value of: getStartKmerPos(testRead, k, FORWARD, g, numMatchesThreshold) Actual: 3 Expected: 5U Which is: 5 [ FAILED ] GetStartKmerPosTest.NumMatchesThreshold (1 ms) [ RUN ] GetStartKmerPosTest.EqualLengthMatchRegions Konnector/DBGBloomAlgorithmsTest.cpp:126: Failure Value of: getStartKmerPos(testRead, k, FORWARD, g, numMatchesThreshold) Actual: 1 Expected: 4U Which is: 4 [ FAILED ] GetStartKmerPosTest.EqualLengthMatchRegions (0 ms) [----------] 4 tests from GetStartKmerPosTest (2 ms total) [----------] 4 tests from CorrectSingleBaseErrorTest [ RUN ] CorrectSingleBaseErrorTest.SingleError Konnector/DBGBloomAlgorithmsTest.cpp:166: Failure Value of: success Actual: false Expected: true [ FAILED ] CorrectSingleBaseErrorTest.SingleError (1 ms) [ RUN ] CorrectSingleBaseErrorTest.ReverseComplement Konnector/DBGBloomAlgorithmsTest.cpp:181: Failure Value of: success Actual: false Expected: true [ FAILED ] CorrectSingleBaseErrorTest.ReverseComplement (1 ms) [ RUN ] CorrectSingleBaseErrorTest.NoError [ OK ] CorrectSingleBaseErrorTest.NoError (1 ms) [ RUN ] CorrectSingleBaseErrorTest.SkipFalsePositive Konnector/DBGBloomAlgorithmsTest.cpp:208: Failure Value of: success Actual: false Expected: true [ FAILED ] CorrectSingleBaseErrorTest.SkipFalsePositive (1 ms) [----------] 4 tests from CorrectSingleBaseErrorTest (4 ms total) [----------] Global test environment tear-down [==========] 8 tests from 2 test cases ran. (7 ms total) [ PASSED ] 3 tests. [ FAILED ] 5 tests, listed below: [ FAILED ] GetStartKmerPosTest.NumMatchesThreshold [ FAILED ] GetStartKmerPosTest.EqualLengthMatchRegions [ FAILED ] CorrectSingleBaseErrorTest.SingleError [ FAILED ] CorrectSingleBaseErrorTest.ReverseComplement [ FAILED ] CorrectSingleBaseErrorTest.SkipFalsePositive 5 FAILED TESTS FAIL Konnector_DBGBloomAlgorithms (exit status: 1) FAIL: Konnector_konnector ========================= Running main() from gtest_main.cc [==========] Running 3 tests from 2 test cases. [----------] Global test environment set-up. [----------] 2 tests from maskNew [ RUN ] maskNew.read1 ACGTACGTa [ OK ] maskNew.read1 (0 ms) [ RUN ] maskNew.mask [ OK ] maskNew.mask (0 ms) [----------] 2 tests from maskNew (0 ms total) [----------] 1 test from ConnectPairsTest [ RUN ] ConnectPairsTest.MergeOverlappingPair Konnector/konnectorTest.cpp:72: Failure Value of: result.pathResult Actual: 6 Expected: FOUND_PATH Which is: 0 Konnector/konnectorTest.cpp:73: Failure Value of: result.mergedSeqs.size() Actual: 0 Expected: 1u Which is: 1 [ FAILED ] ConnectPairsTest.MergeOverlappingPair (0 ms) [----------] 1 test from ConnectPairsTest (0 ms total) [----------] Global test environment tear-down [==========] 3 tests from 2 test cases ran. (1 ms total) [ PASSED ] 2 tests. [ FAILED ] 1 test, listed below: [ FAILED ] ConnectPairsTest.MergeOverlappingPair 1 FAILED TEST FAIL Konnector_konnector (exit status: 1) FAIL: PairedDBG_LoadAlgorithm ============================= Running main() from gtest_main.cc [==========] Running 1 test from 1 test case. [----------] Global test environment set-up. [----------] 1 test from LoadAlgorithmTest [ RUN ] LoadAlgorithmTest.base PairedDBG/LoadAlgorithmTest.cpp:48: Failure Value of: expectedKmerPairs.find(kmerPair) != expectedKmerPairs.end() Actual: false Expected: true [ FAILED ] LoadAlgorithmTest.base (1242 ms) [----------] 1 test from LoadAlgorithmTest (1243 ms total) [----------] Global test environment tear-down [==========] 1 test from 1 test case ran. (1243 ms total) [ PASSED ] 0 tests. [ FAILED ] 1 test, listed below: [ FAILED ] LoadAlgorithmTest.base 1 FAILED TEST FAIL PairedDBG_LoadAlgorithm (exit status: 1) FAIL: PairedDBG_KmerPair ======================== Running main() from gtest_main.cc [==========] Running 5 tests from 1 test case. [----------] Global test environment set-up. [----------] 5 tests from KmerPair [ RUN ] KmerPair.constructors [ OK ] KmerPair.constructors (0 ms) [ RUN ] KmerPair.str [ OK ] KmerPair.str (0 ms) [ RUN ] KmerPair.reverseComplement PairedDBG/KmerPairTest.cc:52: Failure Value of: reverseComplement(k) Actual: ACCAATTG-ACCAATTG Expected: rck Which is: ACGTACGT-CCAAGGTT PairedDBG/KmerPairTest.cc:54: Failure Value of: k Actual: ACGAGAAA-ACGAGAAA Expected: rck Which is: ACGTACGT-CCAAGGTT [ FAILED ] KmerPair.reverseComplement (1 ms) [ RUN ] KmerPair.isPalindrome PairedDBG/KmerPairTest.cc:64: Failure Value of: reverseComplement(kp) Actual: ACGCTGTG-ACGCTGTG Expected: kp Which is: AACCTTGG-CCAAGGTT PairedDBG/KmerPairTest.cc:65: Failure Value of: kp.isPalindrome() Actual: false Expected: true PairedDBG/KmerPairTest.cc:69: Failure Value of: k.isPalindrome() Actual: false Expected: true PairedDBG/KmerPairTest.cc:71: Failure Value of: k.isPalindrome() Actual: false Expected: true [ FAILED ] KmerPair.isPalindrome (0 ms) [ RUN ] KmerPair.isPalindrome_edge PairedDBG/KmerPairTest.cc:86: Failure Value of: kp.isPalindrome(SENSE) Actual: false Expected: true [ FAILED ] KmerPair.isPalindrome_edge (0 ms) [----------] 5 tests from KmerPair (1 ms total) [----------] Global test environment tear-down [==========] 5 tests from 1 test case ran. (1 ms total) [ PASSED ] 2 tests. [ FAILED ] 3 tests, listed below: [ FAILED ] KmerPair.reverseComplement [ FAILED ] KmerPair.isPalindrome [ FAILED ] KmerPair.isPalindrome_edge 3 FAILED TESTS FAIL PairedDBG_KmerPair (exit status: 1) ============================================================================ Testsuite summary for ABySS 2.1.5 ============================================================================ # TOTAL: 32 # PASS: 26 # SKIP: 0 # XFAIL: 0 # FAIL: 6 # XPASS: 0 # ERROR: 0 ============================================================================ See Unittest/test-suite.log Please report to abyss-us...@bcgsc.ca ============================================================================ make[4]: *** [Makefile:1662: test-suite.log] Error 1 (powerpcspe builds with nocheck)
