Your message dated Thu, 13 Dec 2018 10:00:11 +0000
with message-id <[email protected]>
and subject line Bug#909766: fixed in rapmap 0.12.0+dfsg-1
has caused the Debian Bug report #909766,
regarding rapmap FTBFS with spdlog 1:1.1.0-1
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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misconfiguration somewhere. Please contact [email protected]
immediately.)
--
909766: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=909766
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: rapmap
Version: 0.5.0+dfsg-3
Severity: serious
Tags: ftbfs
https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/rapmap.html
...
In file included from /build/1st/rapmap-0.5.0+dfsg/src/RapMapUtils.cpp:26:
/build/1st/rapmap-0.5.0+dfsg/include/RapMapUtils.hpp: In function 'void
rapmap::utils::writeSAMHeader(IndexT&, std::shared_ptr<spdlog::logger>)':
/build/1st/rapmap-0.5.0+dfsg/include/RapMapUtils.hpp:86:18: error:
'MemoryWriter' is not a member of 'fmt'
fmt::MemoryWriter hd;
^~~~~~~~~~~~
/build/1st/rapmap-0.5.0+dfsg/include/RapMapUtils.hpp:87:6: error: 'hd' was not
declared in this scope
hd.write("@HD\tVN:1.0\tSO:unknown\n");
^~
/build/1st/rapmap-0.5.0+dfsg/include/RapMapUtils.hpp: In function 'void
rapmap::utils::writeSAMHeader(IndexT&, std::ostream&)':
/build/1st/rapmap-0.5.0+dfsg/include/RapMapUtils.hpp:106:18: error:
'MemoryWriter' is not a member of 'fmt'
fmt::MemoryWriter hd;
^~~~~~~~~~~~
/build/1st/rapmap-0.5.0+dfsg/include/RapMapUtils.hpp:107:6: error: 'hd' was not
declared in this scope
hd.write("@HD\tVN:1.0\tSO:unknown\n");
^~
/build/1st/rapmap-0.5.0+dfsg/include/RapMapUtils.hpp: At global scope:
/build/1st/rapmap-0.5.0+dfsg/include/RapMapUtils.hpp:125:43: error: expected
template-name before '<' token
class FixedBuffer : public fmt::Buffer<char> {
^
/build/1st/rapmap-0.5.0+dfsg/include/RapMapUtils.hpp:125:43: error: expected
'{' before '<' token
/build/1st/rapmap-0.5.0+dfsg/include/RapMapUtils.hpp:125:43: error: expected
unqualified-id before '<' token
/build/1st/rapmap-0.5.0+dfsg/include/RapMapUtils.hpp:136:44: error: expected
class-name before '{' token
class FixedWriter : public fmt::Writer {
^
/build/1st/rapmap-0.5.0+dfsg/include/RapMapUtils.hpp:138:25: error: field
'buffer_' has incomplete type 'rapmap::utils::FixedBuffer'
FixedBuffer buffer_;
^~~~~~~
/build/1st/rapmap-0.5.0+dfsg/include/RapMapUtils.hpp:125:11: note: forward
declaration of 'class rapmap::utils::FixedBuffer'
class FixedBuffer : public fmt::Buffer<char> {
^~~~~~~~~~~
/build/1st/rapmap-0.5.0+dfsg/include/RapMapUtils.hpp: In constructor
'rapmap::utils::FixedWriter::FixedWriter(char*, std::size_t)':
/build/1st/rapmap-0.5.0+dfsg/include/RapMapUtils.hpp:141:30: error: expected
class-name before '(' token
: fmt::Writer(buffer_), buffer_(array, size) {}
^
/build/1st/rapmap-0.5.0+dfsg/include/RapMapUtils.hpp:141:30: error: expected
'{' before '(' token
...
--- End Message ---
--- Begin Message ---
Source: rapmap
Source-Version: 0.12.0+dfsg-1
We believe that the bug you reported is fixed in the latest version of
rapmap, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <[email protected]> (supplier of updated rapmap package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Wed, 12 Dec 2018 23:05:04 +0100
Source: rapmap
Binary: rapmap rapmap-example-data rapmap-dev
Architecture: source amd64 all
Version: 0.12.0+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Andreas Tille <[email protected]>
Description:
rapmap - rapid sensitive and accurate DNA read mapping via quasi-mapping
rapmap-dev - rapmap - rapid sensitive and accurate DNA read mapping (some head
rapmap-example-data - example data for rapmap - rapid sensitive and accurate
DNA read m
Closes: 909766
Changes:
rapmap (0.12.0+dfsg-1) unstable; urgency=medium
.
* New upstream version
* Point Vcs fields to salsa.debian.org
* Standards-Version: 4.2.1
* Remove trailing whitespace in debian/rules
* For some reason rapmap releases are prefixed by "salmon-" - adapt
watch file
* Do not exclude spdlog any more as long as it is not ported to
version spdlog 1.2.x
Closes: #909766
* Add rapmap-dev package to simplify building salmon and avoid code
duplication in salmon package source
* Lintian override for script-with-language-extension
* Avoid privacy breach
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