Your message dated Thu, 29 Nov 2018 07:19:05 +0000
with message-id <e1gsgbj-000ack...@fasolo.debian.org>
and subject line Bug#914708: fixed in r-bioc-biocparallel 1.16.1-1
has caused the Debian Bug report #914708,
regarding r-bioc-biocparallel: FTBFS with Boost 1.67
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
914708: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=914708
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: r-bioc-biocparallel
Version: 1.16.0-1
Severity: serious
Tags: ftbfs
Hi Maintainer
R-bioc-biocparallel FTBFS [1] with Boost 1.67:
make[1]: Entering directory '/build/1st/r-bioc-biocparallel-1.16.0/src'
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG
-I"/usr/lib/R/site-library/BH/include" -fpic -g -O2
-fdebug-prefix-map=/build/r-base-3.5.1=. -fstack-protector-strong
-Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
ipcmutex.cpp -o ipcmutex.o
ipcmutex.cpp:7:36: error: use of deleted function
'boost::uuids::random_generator_pure::random_generator_pure(boost::uuids::random_generator_pure&&)'
boost::uuids::random_generator();
^
In file included from /usr/include/boost/uuid/uuid_generators.hpp:17,
from ipcmutex.cpp:3:
/usr/include/boost/uuid/random_generator.hpp:149:7: note:
'boost::uuids::random_generator_pure::random_generator_pure(boost::uuids::random_generator_pure&&)'
is implicitly deleted because the default definition would be
ill-formed:
class random_generator_pure
^~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/uuid/random_generator.hpp:149:7: error: use of
deleted function
'boost::uuids::detail::random_provider::random_provider(boost::uuids::detail::random_provider&&)'
In file included from /usr/include/boost/uuid/random_generator.hpp:20,
from /usr/include/boost/uuid/uuid_generators.hpp:17,
from ipcmutex.cpp:3:
/usr/include/boost/uuid/detail/random_provider.hpp:41:7: note:
'boost::uuids::detail::random_provider::random_provider(boost::uuids::detail::random_provider&&)'
is implicitly deleted because the default definition would be
ill-formed:
class random_provider
^~~~~~~~~~~~~~~
/usr/include/boost/uuid/detail/random_provider.hpp:41:7: error: use of
deleted function 'boost::noncopyable_::noncopyable::noncopyable(const
boost::noncopyable_::noncopyable&)'
In file included from /usr/include/boost/uuid/detail/random_provider.hpp:14,
from /usr/include/boost/uuid/random_generator.hpp:20,
from /usr/include/boost/uuid/uuid_generators.hpp:17,
from ipcmutex.cpp:3:
/usr/include/boost/core/noncopyable.hpp:34:7: note: declared here
noncopyable( const noncopyable& ) = delete;
^~~~~~~~~~~
make[1]: *** [/usr/lib/R/etc/Makeconf:168: ipcmutex.o] Error 1
make[1]: Leaving directory '/build/1st/r-bioc-biocparallel-1.16.0/src'
make[1]: Entering directory '/build/1st/r-bioc-biocparallel-1.16.0/src'
make[1]: Leaving directory '/build/1st/r-bioc-biocparallel-1.16.0/src'
ERROR: compilation failed for package 'BiocParallel'
Regards
Graham
[1]
https://tests.reproducible-builds.org/debian/history/amd64/r-bioc-biocparallel.html
--- End Message ---
--- Begin Message ---
Source: r-bioc-biocparallel
Source-Version: 1.16.1-1
We believe that the bug you reported is fixed in the latest version of
r-bioc-biocparallel, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 914...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Dylan Aïssi <dai...@debian.org> (supplier of updated r-bioc-biocparallel
package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Thu, 29 Nov 2018 07:48:46 +0100
Source: r-bioc-biocparallel
Binary: r-bioc-biocparallel
Architecture: source
Version: 1.16.1-1
Distribution: unstable
Urgency: medium
Maintainer: Debian R Packages Maintainers <r-pkg-t...@alioth-lists.debian.net>
Changed-By: Dylan Aïssi <dai...@debian.org>
Description:
r-bioc-biocparallel - BioConductor facilities for parallel evaluation
Closes: 914708
Changes:
r-bioc-biocparallel (1.16.1-1) unstable; urgency=medium
.
* Team upload.
* New upstream version
* Add patch to fix FTBFS with boost 1.67 (Closes: #914708)
Thanks Graham Inggs.
* Add Testsuite: autopkgtest-pkg-r
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