Your message dated Wed, 10 Oct 2018 06:19:03 +0000
with message-id <[email protected]>
and subject line Bug#908459: fixed in theseus 3.3.0-8
has caused the Debian Bug report #908459,
regarding theseus FTBFS with gcc 8
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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--
908459: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=908459
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: theseus
Version: 3.3.0-6
Severity: serious
Tags: ftbfs
https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/theseus.html
...
/usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops
-fomit-frame-pointer -Wall -Werror -pedantic -std=c99 -Wno-unused-result
-pthread -c DLTutils.c
DLTutils.c: In function 'mystrncpy':
DLTutils.c:159:5: error: 'strncpy' specified bound depends on the length of the
source argument [-Werror=stringop-overflow=]
strncpy(s1, s2, len);
^~~~~~~~~~~~~~~~~~~~
DLTutils.c:156:26: note: length computed here
size_t len = strlen(s2); /* minimum allocated length of s2 */
^~~~~~~~~~
DLTutils.c: In function 'mystrcpy':
DLTutils.c:173:5: error: 'strncpy' output truncated before terminating nul
copying as many bytes from a string as its length [-Werror=stringop-truncation]
strncpy(s1, s2, len);
^~~~~~~~~~~~~~~~~~~~
DLTutils.c:171:27: note: length computed here
size_t len = strlen(s2);
^~~~~~~~~~
In function 'mystrcpy',
inlined from 'mystrcat' at DLTutils.c:187:5:
DLTutils.c:173:5: error: 'strncpy' specified bound depends on the length of the
source argument [-Werror=stringop-overflow=]
strncpy(s1, s2, len);
^~~~~~~~~~~~~~~~~~~~
DLTutils.c: In function 'mystrcat':
DLTutils.c:171:27: note: length computed here
size_t len = strlen(s2);
^~~~~~~~~~
In function 'mystrcpy',
inlined from 'GetUniqFileNameNum' at DLTutils.c:323:5:
DLTutils.c:173:5: error: 'strncpy' output truncated before terminating nul
copying as many bytes from a string as its length [-Werror=stringop-truncation]
strncpy(s1, s2, len);
^~~~~~~~~~~~~~~~~~~~
DLTutils.c: In function 'GetUniqFileNameNum':
DLTutils.c:171:27: note: length computed here
size_t len = strlen(s2);
^~~~~~~~~~
In function 'mystrcpy',
inlined from 'GetUniqFileNameNum' at DLTutils.c:323:5,
inlined from 'myfopen' at DLTutils.c:342:5:
DLTutils.c:173:5: error: 'strncpy' output truncated before terminating nul
copying as many bytes from a string as its length [-Werror=stringop-truncation]
strncpy(s1, s2, len);
^~~~~~~~~~~~~~~~~~~~
DLTutils.c: In function 'myfopen':
DLTutils.c:171:27: note: length computed here
size_t len = strlen(s2);
^~~~~~~~~~
In function 'mystrncpy',
inlined from 'getroot' at DLTutils.c:560:5:
DLTutils.c:159:5: error: 'strncpy' specified bound depends on the length of the
source argument [-Werror=stringop-overflow=]
strncpy(s1, s2, len);
^~~~~~~~~~~~~~~~~~~~
DLTutils.c: In function 'getroot':
DLTutils.c:556:30: note: length computed here
int length = strlen(filename);
^~~~~~~~~~~~~~~~
cc1: all warnings being treated as errors
make[3]: *** [Makefile:10: DLTutils.o] Error 1
--- End Message ---
--- Begin Message ---
Source: theseus
Source-Version: 3.3.0-8
We believe that the bug you reported is fixed in the latest version of
theseus, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <[email protected]> (supplier of updated theseus package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Wed, 10 Oct 2018 08:04:34 +0200
Source: theseus
Binary: theseus theseus-examples
Architecture: source
Version: 3.3.0-8
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Andreas Tille <[email protected]>
Description:
theseus - superimpose macromolecules using maximum likelihood
theseus-examples - superimpose macromolecules using maximum likelihood
(examples)
Closes: 908459
Changes:
theseus (3.3.0-8) unstable; urgency=medium
.
* Fix string buffer size
Closes: #908459
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