Your message dated Mon, 20 Aug 2018 14:58:14 +0200 with message-id <20180820125814.fzs3uj4s5bk7rp3y@nuc> and subject line Re: Bug#906509: sra-sdk: FTBFS in buster (unknown type name 'HttpProxy') has caused the Debian Bug report #906509, regarding sra-sdk: FTBFS in buster (unknown type name 'HttpProxy') to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 906509: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=906509 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Package: src:sra-sdk Version: 2.8.2-5+dfsg-1 Severity: serious Tags: ftbfs Dear maintainer: I tried to build this package in buster but it failed: -------------------------------------------------------------------------------- [...] debian/rules build-arch dh build-arch --no-parallel debian/rules override_dh_update_autotools_config make[1]: Entering directory '/<<BUILDDIR>>/sra-sdk-2.8.2-5+dfsg' echo "do nothing" do nothing make[1]: Leaving directory '/<<BUILDDIR>>/sra-sdk-2.8.2-5+dfsg' dh_autoreconf -a debian/rules override_dh_auto_configure make[1]: Entering directory '/<<BUILDDIR>>/sra-sdk-2.8.2-5+dfsg' # output dir will be checked so create it before mkdir -p debian/tmp/usr/lib ln -s /usr/lib/x86_64-linux-gnu debian/tmp/usr/lib # [... snipped ...] gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/<<BUILDDIR>>/sra-sdk-2.8.2-5+dfsg/interfaces/override -I/<<BUILDDIR>>/sra-sdk-2.8.2-5+dfsg/tools/util/linux -I/<<BUILDDIR>>/sra-sdk-2.8.2-5+dfsg/tools/util/unix -I/<<BUILDDIR>>/sra-sdk-2.8.2-5+dfsg/tools/util -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/sra-sdk-2.8.2-5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -MD -o md5cp.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /<<BUILDDIR>>/sra-sdk-2.8.2-5+dfsg/tools/util/md5cp.c -D__mod_name__=tools/util -D__file_name__=md5cp -D__file_ext__=c +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ gcc -static-libgcc -o /<<BUILDDIR>>/sra-sdk-2.8.2-5+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/md5cp.2.8.2 -DNDEBUG -m64 -Wl,-z,relro -Wl,-z,now md5cp.o -L/<<BUILDDIR>>/sra-sdk-2.8.2-5+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/<<BUILDDIR>>/sra-sdk-2.8.2-5+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto ln -s md5cp.2.8.2 md5cp.2 ln -s md5cp.2 md5cp gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/<<BUILDDIR>>/sra-sdk-2.8.2-5+dfsg/interfaces/override -I/<<BUILDDIR>>/sra-sdk-2.8.2-5+dfsg/tools/util/linux -I/<<BUILDDIR>>/sra-sdk-2.8.2-5+dfsg/tools/util/unix -I/<<BUILDDIR>>/sra-sdk-2.8.2-5+dfsg/tools/util -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/sra-sdk-2.8.2-5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -MD -o vdb-lock.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /<<BUILDDIR>>/sra-sdk-2.8.2-5+dfsg/tools/util/vdb-lock.c -D__mod_name__=tools/util -D__file_name__=vdb-lock -D__file_ext__=c +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ gcc -static-libgcc -o /<<BUILDDIR>>/sra-sdk-2.8.2-5+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/vdb-lock.2.8.2 -DNDEBUG -m64 -Wl,-z,relro -Wl,-z,now vdb-lock.o -L/<<BUILDDIR>>/sra-sdk-2.8.2-5+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/<<BUILDDIR>>/sra-sdk-2.8.2-5+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-wvdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto ln -s vdb-lock.2.8.2 vdb-lock.2 ln -s vdb-lock.2 vdb-lock gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/<<BUILDDIR>>/sra-sdk-2.8.2-5+dfsg/interfaces/override -I/<<BUILDDIR>>/sra-sdk-2.8.2-5+dfsg/tools/util/linux -I/<<BUILDDIR>>/sra-sdk-2.8.2-5+dfsg/tools/util/unix -I/<<BUILDDIR>>/sra-sdk-2.8.2-5+dfsg/tools/util -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/sra-sdk-2.8.2-5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -MD -o vdb-unlock.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /<<BUILDDIR>>/sra-sdk-2.8.2-5+dfsg/tools/util/vdb-unlock.c -D__mod_name__=tools/util -D__file_name__=vdb-unlock -D__file_ext__=c +++++++++++++++++++++++++ adding zlib +++++++++++++++++++++++++++++++++++++++ gcc -static-libgcc -o /<<BUILDDIR>>/sra-sdk-2.8.2-5+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/vdb-unlock.2.8.2 -DNDEBUG -m64 -Wl,-z,relro -Wl,-z,now vdb-unlock.o -L/<<BUILDDIR>>/sra-sdk-2.8.2-5+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/lib -L/<<BUILDDIR>>/sra-sdk-2.8.2-5+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/ilib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lkapp -ltk-version -lncbi-wvdb -Wl,-Bdynamic -ldl -lpthread -lxml2 -Wl,-Bdynamic -lm -lz -lbz2 -lsz -lmbedx509 -lmbedtls -lmbedcrypto ln -s vdb-unlock.2.8.2 vdb-unlock.2 ln -s vdb-unlock.2 vdb-unlock gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/<<BUILDDIR>>/sra-sdk-2.8.2-5+dfsg/interfaces/override -I/<<BUILDDIR>>/sra-sdk-2.8.2-5+dfsg/tools/util/linux -I/<<BUILDDIR>>/sra-sdk-2.8.2-5+dfsg/tools/util/unix -I/<<BUILDDIR>>/sra-sdk-2.8.2-5+dfsg/tools/util -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/sra-sdk-2.8.2-5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -MD -o PrintOS.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /<<BUILDDIR>>/sra-sdk-2.8.2-5+dfsg/tools/util/unix/PrintOS.c -D__mod_name__=tools/util -D__file_name__=PrintOS -D__file_ext__=c gcc -c -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/<<BUILDDIR>>/sra-sdk-2.8.2-5+dfsg/interfaces/override -I/<<BUILDDIR>>/sra-sdk-2.8.2-5+dfsg/tools/util/linux -I/<<BUILDDIR>>/sra-sdk-2.8.2-5+dfsg/tools/util/unix -I/<<BUILDDIR>>/sra-sdk-2.8.2-5+dfsg/tools/util -I/usr/include/ncbi-vdb/ -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/ext -I/usr/include -I. -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/sra-sdk-2.8.2-5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -MD -o test-sra.o -O3 -Wno-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -Wall /<<BUILDDIR>>/sra-sdk-2.8.2-5+dfsg/tools/util/test-sra.c -D__mod_name__=tools/util -D__file_name__=test-sra -D__file_ext__=c /<<BUILDDIR>>/sra-sdk-2.8.2-5+dfsg/tools/util/test-sra.c: In function 'MainNetwotk': /<<BUILDDIR>>/sra-sdk-2.8.2-5+dfsg/tools/util/test-sra.c:2619:19: error: unknown type name 'HttpProxy' const HttpProxy *p = KNSManagerGetHttpProxy(self->knsMgr); ^~~~~~~~~ /<<BUILDDIR>>/sra-sdk-2.8.2-5+dfsg/tools/util/test-sra.c:2619:34: warning: implicit declaration of function 'KNSManagerGetHttpProxy'; did you mean 'KNSManagerGetProxies'? [-Wimplicit-function-declaration] const HttpProxy *p = KNSManagerGetHttpProxy(self->knsMgr); ^~~~~~~~~~~~~~~~~~~~~~ KNSManagerGetProxies /<<BUILDDIR>>/sra-sdk-2.8.2-5+dfsg/tools/util/test-sra.c:2619:34: warning: initialization of 'const int *' from 'int' makes pointer from integer without a cast [-Wint-conversion] /<<BUILDDIR>>/sra-sdk-2.8.2-5+dfsg/tools/util/test-sra.c:2624:17: warning: implicit declaration of function 'HttpProxyGet' [-Wimplicit-function-declaration] HttpProxyGet(p, &http_proxy, &http_proxy_port); ^~~~~~~~~~~~ /<<BUILDDIR>>/sra-sdk-2.8.2-5+dfsg/tools/util/test-sra.c:2644:21: warning: implicit declaration of function 'HttpProxyGetNextHttpProxy' [-Wimplicit-function-declaration] p = HttpProxyGetNextHttpProxy ( p ); ^~~~~~~~~~~~~~~~~~~~~~~~~ /<<BUILDDIR>>/sra-sdk-2.8.2-5+dfsg/tools/util/test-sra.c:2644:19: warning: assignment to 'const int *' from 'int' makes pointer from integer without a cast [-Wint-conversion] p = HttpProxyGetNextHttpProxy ( p ); ^ make[5]: *** [/<<BUILDDIR>>/sra-sdk-2.8.2-5+dfsg/build/Makefile.rules:31: test-sra.o] Error 1 make[5]: Leaving directory '/<<BUILDDIR>>/sra-sdk-2.8.2-5+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/obj/tools/util' make[4]: *** [Makefile:63: std] Error 2 make[4]: Leaving directory '/<<BUILDDIR>>/sra-sdk-2.8.2-5+dfsg/tools/util' make[3]: *** [Makefile:81: util] Error 2 make[3]: Leaving directory '/<<BUILDDIR>>/sra-sdk-2.8.2-5+dfsg/tools' make[2]: *** [Makefile:48: tools] Error 2 make[2]: Leaving directory '/<<BUILDDIR>>/sra-sdk-2.8.2-5+dfsg' make[1]: *** [debian/rules:36: override_dh_auto_build] Error 2 make[1]: Leaving directory '/<<BUILDDIR>>/sra-sdk-2.8.2-5+dfsg' make: *** [debian/rules:9: build-arch] Error 2 dpkg-buildpackage: error: debian/rules build-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- The build was made with "dpkg-buildpackage -B" in my autobuilder. Most probably, it also fails here in reproducible builds: https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/sra-sdk.html where you can get a full build log if you need it. If this is really a bug in one of the build-depends, please use reassign and affects, so that this is still visible in the BTS web page for this package. Thanks.
--- End Message ---
--- Begin Message ---Version: 2.9.1-1+dfsg-2 This one seems fixed in sid. Thanks.
--- End Message ---
