Your message dated Sat, 18 Aug 2018 06:19:35 +0000
with message-id <e1fquaf-000gfo...@fasolo.debian.org>
and subject line Bug#906481: fixed in libfastahack
0.0+git20160702.bbc645f+dfsg-2
has caused the Debian Bug report #906481,
regarding libfastahack: FTBFS in buster/sid (ld: cannot find -lfastahack)
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
906481: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=906481
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: src:libfastahack
Version: 0.0+20160702-1
Severity: serious
Tags: ftbfs
Dear maintainer:
I tried to build this package in buster but it failed:
--------------------------------------------------------------------------------
[...]
debian/rules build-arch
dh build-arch --with autoreconf
dh_update_autotools_config -a
dh_autoreconf -a
aclocal: warning: couldn't open directory 'config': No such file or directory
libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'config'.
libtoolize: copying file 'config/ltmain.sh'
libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'config'.
libtoolize: copying file 'config/libtool.m4'
libtoolize: copying file 'config/ltoptions.m4'
libtoolize: copying file 'config/ltsugar.m4'
libtoolize: copying file 'config/ltversion.m4'
libtoolize: copying file 'config/lt~obsolete.m4'
libtoolize: Consider adding '-I config' to ACLOCAL_AMFLAGS in Makefile.am.
[... snipped ...]
checking how to run the C++ preprocessor... g++ -E
checking for ld used by g++... /usr/bin/ld -m elf_x86_64
checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes
checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared
libraries... yes
checking for g++ option to produce PIC... -fPIC -DPIC
checking if g++ PIC flag -fPIC -DPIC works... yes
checking if g++ static flag -static works... yes
checking if g++ supports -c -o file.o... yes
checking if g++ supports -c -o file.o... (cached) yes
checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared
libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
./configure: line 15957: AX_CXXFLAGS: command not found
checking for ANSI C header files... (cached) yes
checking for stdlib.h... (cached) yes
checking whether make sets $(MAKE)... (cached) yes
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating libfastahack.pc
config.status: creating config.h
config.status: executing depfiles commands
config.status: executing libtool commands
configure: WARNING: unrecognized options: --disable-maintainer-mode
dh_auto_build -a
make -j1
make[1]: Entering directory '/<<BUILDDIR>>/libfastahack-0.0+20160702'
(CDPATH="${ZSH_VERSION+.}:" && cd . && /bin/bash
/<<BUILDDIR>>/libfastahack-0.0+20160702/config/missing autoheader)
rm -f stamp-h1
touch config.h.in
cd . && /bin/bash ./config.status config.h
config.status: creating config.h
config.status: config.h is unchanged
make all-am
make[2]: Entering directory '/<<BUILDDIR>>/libfastahack-0.0+20160702'
g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2
-fdebug-prefix-map=/<<BUILDDIR>>/libfastahack-0.0+20160702=.
-fstack-protector-strong -Wformat -Werror=format-security -c -o FastaHack.o
FastaHack.cpp
/bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2
-fdebug-prefix-map=/<<BUILDDIR>>/libfastahack-0.0+20160702=.
-fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro
-Wl,-z,now -o fastahack FastaHack.o -lfastahack -ldisorder
libtool: link: g++ -g -O2
-fdebug-prefix-map=/<<BUILDDIR>>/libfastahack-0.0+20160702=.
-fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro
-Wl,-z -Wl,now -o fastahack FastaHack.o -lfastahack -ldisorder
/usr/bin/ld: cannot find -lfastahack
collect2: error: ld returned 1 exit status
make[2]: *** [Makefile:530: fastahack] Error 1
make[2]: Leaving directory '/<<BUILDDIR>>/libfastahack-0.0+20160702'
make[1]: *** [Makefile:386: all] Error 2
make[1]: Leaving directory '/<<BUILDDIR>>/libfastahack-0.0+20160702'
dh_auto_build: make -j1 returned exit code 2
make: *** [debian/rules:11: build-arch] Error 2
dpkg-buildpackage: error: debian/rules build-arch subprocess returned exit
status 2
--------------------------------------------------------------------------------
The build was made with "dpkg-buildpackage -B" in my autobuilder.
Most probably, it also fails here in reproducible builds:
https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/libfastahack.html
where you can get a full build log if you need it.
If this is really a bug in one of the build-depends, please use reassign and
affects,
so that this is still visible in the BTS web page for this package.
Thanks.
--- End Message ---
--- Begin Message ---
Source: libfastahack
Source-Version: 0.0+git20160702.bbc645f+dfsg-2
We believe that the bug you reported is fixed in the latest version of
libfastahack, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 906...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <ti...@debian.org> (supplier of updated libfastahack package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Sat, 18 Aug 2018 07:54:07 +0200
Source: libfastahack
Binary: libfastahack0 libfastahack-dev fastahack
Architecture: source
Version: 0.0+git20160702.bbc645f+dfsg-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
fastahack - utility for indexing and sequence extraction from FASTA files
libfastahack-dev - library for indexing and sequence extraction from FASTA
files (de
libfastahack0 - library for indexing and sequence extraction from FASTA files
(li
Closes: 906481
Changes:
libfastahack (0.0+git20160702.bbc645f+dfsg-2) unstable; urgency=medium
.
[ Adrian Bunk ]
* Fix Makefile.am
Closes: #906481
.
[ Andreas Tille ]
* Standards-Version: 4.2.0
* d/rules: Drop --no-parallel
* drop +dfsg from symbols file
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Files:
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--- End Message ---
