Package: src:mshr
Version: 2017.2.0+dfsg1-1
Severity: serious
Tags: ftbfs
Dear maintainer:
I tried to build this package in sid but it failed:
--------------------------------------------------------------------------------
[...]
debian/rules build-indep
pyversions: missing X(S)-Python-Version in control file, fall back to
debian/pyversions
pyversions: missing debian/pyversions file, fall back to supported versions
dh build-indep --buildsystem=cmake \
--with python2,python3
dh_update_autotools_config -i -O--buildsystem=cmake
dh_autoreconf -i -O--buildsystem=cmake
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<BUILDDIR>>/mshr-2017.2.0+dfsg1'
pyversions: missing X(S)-Python-Version in control file, fall back to
debian/pyversions
pyversions: missing debian/pyversions file, fall back to supported versions
for v in python3.6 python3.7 python2.7; do \
dh_auto_configure
--builddirectory=/<<BUILDDIR>>/mshr-2017.2.0+dfsg1/debian/build-$v -- \
-D PYTHON_EXECUTABLE:FILEPATH=/usr/bin/$v \
[... snipped ...]
[ 80%] Linking CXX shared library libmshr.so
/usr/bin/cmake -E cmake_link_script CMakeFiles/mshr.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -fpermissive -std=c++0x -Wall -O3 -DNDEBUG -Wl,-z,relro
-shared -Wl,-soname,libmshr.so.2017.2 -o libmshr.so.2017.2.0
CMakeFiles/mshr.dir/src/ASCFileReader.cpp.o
CMakeFiles/mshr.dir/src/CSGCGALDomain2D.cpp.o
CMakeFiles/mshr.dir/src/CSGCGALDomain3D.cpp.o
CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator2D.cpp.o
CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator3D.cpp.o
CMakeFiles/mshr.dir/src/CSGGeometries3D.cpp.o
CMakeFiles/mshr.dir/src/CSGGeometry.cpp.o
CMakeFiles/mshr.dir/src/CSGOperators.cpp.o
CMakeFiles/mshr.dir/src/CSGPrimitives2D.cpp.o
CMakeFiles/mshr.dir/src/CSGPrimitives3D.cpp.o
CMakeFiles/mshr.dir/src/DolfinMeshUtils.cpp.o
CMakeFiles/mshr.dir/src/GlobalInitializer.cpp.o
CMakeFiles/mshr.dir/src/MeshGenerator.cpp.o
CMakeFiles/mshr.dir/src/Meshes.cpp.o
CMakeFiles/mshr.dir/src/OFFFileReader.cpp.o
CMakeFiles/mshr.dir/src/STLFileReader.cpp.o
CMakeFiles/mshr.dir/src/SurfaceConsistency.cpp.o
CMakeFiles/mshr.dir/src/SurfaceReconstruction.cpp.o
CMakeFiles/mshr.dir/src/TetgenMes
hGenerator3D.cpp.o /usr/lib/x86_64-linux-gnu/libboost_system.so
/usr/lib/x86_64-linux-gnu/libboost_filesystem.so
/usr/lib/x86_64-linux-gnu/libboost_program_options.so
/usr/lib/x86_64-linux-gnu/libgmp.so /usr/lib/x86_64-linux-gnu/libmpfr.so -ltet
/usr/lib/x86_64-linux-gnu/libdolfin.so.2018.1.0
/usr/lib/x86_64-linux-gnu/libboost_system.so
/usr/lib/x86_64-linux-gnu/libboost_filesystem.so
/usr/lib/x86_64-linux-gnu/libboost_program_options.so
/usr/lib/x86_64-linux-gnu/libgmp.so /usr/lib/x86_64-linux-gnu/libmpfr.so -ltet
/usr/lib/x86_64-linux-gnu/libboost_timer.so
/usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so
/usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so
/usr/lib/x86_64-linux-gnu/libdl.so -lm
/usr/lib/slepcdir/slepc3.9/x86_64-linux-gnu-real/lib/libslepc_real.so
/usr/lib/petscdir/petsc3.9/x86_64-linux-gnu-real/lib/libpetsc_real.so
/usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so
/usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so
/usr/bin/cmake -E cmake_symlink_library libmshr.so.2017.2.0 libmshr.so.2017.2
libmshr.so
make[4]: Leaving directory
'/<<BUILDDIR>>/mshr-2017.2.0+dfsg1/debian/build-python2.7'
[ 80%] Built target mshr
make -f CMakeFiles/mshrable.dir/build.make CMakeFiles/mshrable.dir/depend
make[4]: Entering directory
'/<<BUILDDIR>>/mshr-2017.2.0+dfsg1/debian/build-python2.7'
cd /<<BUILDDIR>>/mshr-2017.2.0+dfsg1/debian/build-python2.7 && /usr/bin/cmake
-E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/mshr-2017.2.0+dfsg1
/<<BUILDDIR>>/mshr-2017.2.0+dfsg1
/<<BUILDDIR>>/mshr-2017.2.0+dfsg1/debian/build-python2.7
/<<BUILDDIR>>/mshr-2017.2.0+dfsg1/debian/build-python2.7
/<<BUILDDIR>>/mshr-2017.2.0+dfsg1/debian/build-python2.7/CMakeFiles/mshrable.dir/DependInfo.cmake
--color=
Scanning dependencies of target mshrable
make[4]: Leaving directory
'/<<BUILDDIR>>/mshr-2017.2.0+dfsg1/debian/build-python2.7'
make -f CMakeFiles/mshrable.dir/build.make CMakeFiles/mshrable.dir/build
make[4]: Entering directory
'/<<BUILDDIR>>/mshr-2017.2.0+dfsg1/debian/build-python2.7'
[ 84%] Building CXX object CMakeFiles/mshrable.dir/app/mshrable.cpp.o
/usr/bin/c++ -DDOLFIN_VERSION=\"2018.1.0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI
-DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG
-DTETLIBRARY -D_FORTIFY_SOURCE=2 -I/<<BUILDDIR>>/mshr-2017.2.0+dfsg1/include
-I/include -I/usr/include/x86_64-linux-gnu -isystem /usr/include/eigen3
-isystem /usr/include/hdf5/openmpi -isystem
/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem
/usr/lib/x86_64-linux-gnu/openmpi/include -isystem
/usr/lib/slepcdir/slepc3.9/x86_64-linux-gnu-real/include -isystem
/usr/lib/petscdir/petsc3.9/x86_64-linux-gnu-real/include -isystem
/usr/include/suitesparse -isystem /usr/include/superlu -isystem
/usr/include/superlu-dist -isystem /usr/include/hypre -isystem
/usr/include/scotch -fpermissive -std=c++0x -Wall -O3 -DNDEBUG -std=c++11 -o
CMakeFiles/mshrable.dir/app/mshrable.cpp.o -c
/<<BUILDDIR>>/mshr-2017.2.0+dfsg1/app/mshrable.cpp
[ 88%] Linking CXX executable mshrable
/usr/bin/cmake -E cmake_link_script CMakeFiles/mshrable.dir/link.txt --verbose=1
/usr/bin/c++ -fpermissive -std=c++0x -Wall -O3 -DNDEBUG -Wl,-z,relro
CMakeFiles/mshrable.dir/app/mshrable.cpp.o -o mshrable libmshr.so.2017.2.0
/usr/lib/x86_64-linux-gnu/libdolfin.so.2018.1.0
/usr/lib/x86_64-linux-gnu/libboost_system.so
/usr/lib/x86_64-linux-gnu/libboost_filesystem.so
/usr/lib/x86_64-linux-gnu/libboost_program_options.so
/usr/lib/x86_64-linux-gnu/libboost_timer.so
/usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so
/usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so
/usr/lib/x86_64-linux-gnu/libdl.so -lm
/usr/lib/slepcdir/slepc3.9/x86_64-linux-gnu-real/lib/libslepc_real.so
/usr/lib/petscdir/petsc3.9/x86_64-linux-gnu-real/lib/libpetsc_real.so
/usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so
/usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so
/usr/lib/x86_64-linux-gnu/libgmp.so /usr/lib/x86_64-linux-gnu/libmpfr.so -ltet
/usr/lib/x86_64-linux-gnu/libboost_system.so
/usr/lib/x86_64-linux-gnu/libboost_filesystem.so
/usr/lib/x86_64-linux-gnu/libboost_progr
am_options.so
make[4]: Leaving directory
'/<<BUILDDIR>>/mshr-2017.2.0+dfsg1/debian/build-python2.7'
[ 88%] Built target mshrable
make -f swig/CMakeFiles/gen_mshr_mshrPYTHON_wrap.dir/build.make
swig/CMakeFiles/gen_mshr_mshrPYTHON_wrap.dir/depend
make[4]: Entering directory
'/<<BUILDDIR>>/mshr-2017.2.0+dfsg1/debian/build-python2.7'
cd /<<BUILDDIR>>/mshr-2017.2.0+dfsg1/debian/build-python2.7 && /usr/bin/cmake
-E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/mshr-2017.2.0+dfsg1
/<<BUILDDIR>>/mshr-2017.2.0+dfsg1/swig
/<<BUILDDIR>>/mshr-2017.2.0+dfsg1/debian/build-python2.7
/<<BUILDDIR>>/mshr-2017.2.0+dfsg1/debian/build-python2.7/swig
/<<BUILDDIR>>/mshr-2017.2.0+dfsg1/debian/build-python2.7/swig/CMakeFiles/gen_mshr_mshrPYTHON_wrap.dir/DependInfo.cmake
--color=
Scanning dependencies of target gen_mshr_mshrPYTHON_wrap
make[4]: Leaving directory
'/<<BUILDDIR>>/mshr-2017.2.0+dfsg1/debian/build-python2.7'
make -f swig/CMakeFiles/gen_mshr_mshrPYTHON_wrap.dir/build.make
swig/CMakeFiles/gen_mshr_mshrPYTHON_wrap.dir/build
make[4]: Entering directory
'/<<BUILDDIR>>/mshr-2017.2.0+dfsg1/debian/build-python2.7'
[ 92%] Swig source
cd /<<BUILDDIR>>/mshr-2017.2.0+dfsg1/debian/build-python2.7/swig &&
/usr/bin/cmake -E make_directory
/<<BUILDDIR>>/mshr-2017.2.0+dfsg1/debian/build-python2.7/swig
cd /<<BUILDDIR>>/mshr-2017.2.0+dfsg1/debian/build-python2.7/swig &&
/usr/bin/cmake -E touch
/<<BUILDDIR>>/mshr-2017.2.0+dfsg1/debian/build-python2.7/swig/mshrPYTHON_wrap.stamp
cd /<<BUILDDIR>>/mshr-2017.2.0+dfsg1/debian/build-python2.7/swig &&
/usr/bin/swig3.0 -python -module mshr -shadow -modern -modernargs -fastdispatch
-fvirtual -nosafecstrings -noproxydel -fastproxy -fastinit -fastunpack
-fastquery -nobuildnone -Iinclude/swig -Wextra -DDOLFIN_VERSION="2018.1.0"
-outdir /<<BUILDDIR>>/mshr-2017.2.0+dfsg1/debian/build-python2.7/swig -c++
-I/<<BUILDDIR>>/mshr-2017.2.0+dfsg1/include -I/usr/include -I/include
-I/usr/include/x86_64-linux-gnu -I/usr/include/eigen3
-I/<<BUILDDIR>>/mshr-2017.2.0+dfsg1/swig -o
/<<BUILDDIR>>/mshr-2017.2.0+dfsg1/debian/build-python2.7/swig/mshrPYTHON_wrap.cxx
/<<BUILDDIR>>/mshr-2017.2.0+dfsg1/swig/mshr.i
/<<BUILDDIR>>/mshr-2017.2.0+dfsg1/swig/mshr.i:36: Error: Unable to find
'dolfin/swig/typemaps/includes.i'
/<<BUILDDIR>>/mshr-2017.2.0+dfsg1/swig/mshr.i:37: Error: Unable to find
'dolfin/swig/forwarddeclarations.i'
/<<BUILDDIR>>/mshr-2017.2.0+dfsg1/swig/mshr.i:41: Error: Unable to find
'dolfin/swig/exceptions.i'
/<<BUILDDIR>>/mshr-2017.2.0+dfsg1/swig/mshr.i:54: Error: Unable to find
'dolfin/swig/common/pre.i'
/<<BUILDDIR>>/mshr-2017.2.0+dfsg1/swig/mshr.i:63: Error: Unable to find
'dolfin/swig/mesh/pre.i'
/<<BUILDDIR>>/mshr-2017.2.0+dfsg1/swig/mshr.i:66: Error: Unable to find
'dolfin/swig/geometry/pre.i'
make[4]: *** [swig/CMakeFiles/gen_mshr_mshrPYTHON_wrap.dir/build.make:67:
swig/mshrPYTHON_wrap.stamp] Error 1
make[4]: *** Deleting file 'swig/mshrPYTHON_wrap.stamp'
make[4]: Leaving directory
'/<<BUILDDIR>>/mshr-2017.2.0+dfsg1/debian/build-python2.7'
make[3]: *** [CMakeFiles/Makefile2:1116:
swig/CMakeFiles/gen_mshr_mshrPYTHON_wrap.dir/all] Error 2
make[3]: Leaving directory
'/<<BUILDDIR>>/mshr-2017.2.0+dfsg1/debian/build-python2.7'
make[2]: *** [Makefile:144: all] Error 2
make[2]: Leaving directory
'/<<BUILDDIR>>/mshr-2017.2.0+dfsg1/debian/build-python2.7'
dh_auto_build: cd debian/build-python2.7 && make -j1 "INSTALL=install
--strip-program=true" returned exit code 2
make[1]: *** [debian/rules:77: override_dh_auto_build] Error 2
make[1]: Leaving directory '/<<BUILDDIR>>/mshr-2017.2.0+dfsg1'
make: *** [debian/rules:58: build-indep] Error 2
dpkg-buildpackage: error: debian/rules build-indep subprocess returned exit
status 2
--------------------------------------------------------------------------------
The build was made with "dpkg-buildpackage -A" in my autobuilder,
but it also fails here in every architecture:
https://buildd.debian.org/status/package.php?p=mshr
Thanks.
