Your message dated Thu, 26 Jul 2018 13:48:52 +0000
with message-id <[email protected]>
and subject line Bug#897750: fixed in freecontact 1.0.21-7
has caused the Debian Bug report #897750,
regarding freecontact: ftbfs with GCC-8
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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misconfiguration somewhere. Please contact [email protected]
immediately.)
--
897750: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=897750
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: src:freecontact
Version: 1.0.21-6
Severity: normal
Tags: sid buster
User: [email protected]
Usertags: ftbfs-gcc-8
Please keep this issue open in the bug tracker for the package it
was filed for. If a fix in another package is required, please
file a bug for the other package (or clone), and add a block in this
package. Please keep the issue open until the package can be built in
a follow-up test rebuild.
The package fails to build in a test rebuild on at least amd64 with
gcc-8/g++-8, but succeeds to build with gcc-7/g++-7. The
severity of this report will be raised before the buster release.
The full build log can be found at:
http://aws-logs.debian.net/2018/05/01/gcc8/freecontact_1.0.21-6_unstable_gcc8.log.gz
The last lines of the build log are at the end of this report.
To build with GCC 8, either set CC=gcc-8 CXX=g++-8 explicitly,
or install the gcc, g++, gfortran, ... packages from experimental.
apt-get -t=experimental install g++
Common build failures are new warnings resulting in build failures with
-Werror turned on, or new/dropped symbols in Debian symbols files.
For other C/C++ related build failures see the porting guide at
http://gcc.gnu.org/gcc-8/porting_to.html
[...]
/usr/bin/install -c -m 644 freecontact.h
'/<<PKGBUILDDIR>>/debian/tmp/usr/include'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/lib'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/lib'
Making install in src
make[2]: Entering directory '/<<PKGBUILDDIR>>/src'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src'
/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/bin'
/bin/bash ../libtool --mode=install /usr/bin/install -c freecontact
'/<<PKGBUILDDIR>>/debian/tmp/usr/bin'
libtool: warning: '../lib/libfreecontact.la' has not been installed in
'/usr/lib/x86_64-linux-gnu'
libtool: install: /usr/bin/install -c .libs/freecontact
/<<PKGBUILDDIR>>/debian/tmp/usr/bin/freecontact
/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/share/doc/freecontact/examples'
/usr/bin/install -c -m 644 demo_1000.aln demo_1000.psicov.50
PF00071_v25_999.fa PF00071_v25_999.xml PF00071_v25_999.evfold.50
PF00071_v25_999.evfold.50.xml
'/<<PKGBUILDDIR>>/debian/tmp/usr/share/doc/freecontact/examples'
/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/share/freecontact'
/usr/bin/install -c -m 644 BioXSD-1.1.xsd freecontact_input.xsd
freecontact_output.xsd '/<<PKGBUILDDIR>>/debian/tmp/usr/share/freecontact'
/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/share/freecontact'
/usr/bin/install -c a2m2aln '/<<PKGBUILDDIR>>/debian/tmp/usr/share/freecontact'
/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/share/man/man1'
/usr/bin/install -c -m 644 freecontact.1
'/<<PKGBUILDDIR>>/debian/tmp/usr/share/man/man1'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[2]: Entering directory '/<<PKGBUILDDIR>>'
make[3]: Entering directory '/<<PKGBUILDDIR>>'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>'
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules override_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_install
d-shlibmove --commit \
--multiarch \
--exclude-la \
--devunversioned \
--override s/libblas3-dev/libblas-dev/ \
--v5 \
--override s/libgfortran[34]-dev/libgfortran-7-dev/ \
--override s/libquadmath0-dev/libgcc-7-dev/ \
--override s/liblapack3-dev/liblapack-dev/ \
--movedev debian/tmp/usr/include/* usr/include \
debian/tmp/usr/lib/*/*.so
Library package automatic movement utility
--> libblas-dev package exists.
--> libgcc-7-dev package exists.
devlibs error: There is no package matching [libgfortran5-dev] and noone
provides it, please report bug to d-shlibs maintainer
--> liblapack-dev package exists.
make[1]: *** [debian/rules:29: override_dh_install] Error 1
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:13: binary-arch] Error 2
dpkg-buildpackage: error: fakeroot debian/rules binary-arch subprocess returned
exit status 2
--- End Message ---
--- Begin Message ---
Source: freecontact
Source-Version: 1.0.21-7
We believe that the bug you reported is fixed in the latest version of
freecontact, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <[email protected]> (supplier of updated freecontact package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Thu, 26 Jul 2018 15:32:51 +0200
Source: freecontact
Binary: freecontact libfreecontact0v5 libfreecontact-dev libfreecontact-doc
Architecture: source
Version: 1.0.21-7
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Andreas Tille <[email protected]>
Description:
freecontact - fast protein contact predictor
libfreecontact-dev - fast protein contact predictor library - development files
libfreecontact-doc - documentation for libfreecontact
libfreecontact0v5 - fast protein contact predictor library
Closes: 897750
Changes:
freecontact (1.0.21-7) unstable; urgency=medium
.
* Fix d-shlibmove override to fit gcc-8
Closes: #897750
* debhelper 11
* Point Vcs fields to salsa.debian.org
* Standards-Version: 4.1.5
* Do not Build-Depends: automake
* Remove useless get-orig-source target
* Drop unused lintian override
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freecontact_1.0.21-7.debian.tar.xz
Checksums-Sha256:
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Files:
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d03433ba3d298f5b636c4972add1dddf 5600 science optional
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--- End Message ---
