Package: libopenmpi-dev Version: 3.1.1.real-2 Severity: grave Justification: renders package unusable
Did something get missed in 3.1.1.real-2? It still depends on libpmix2 (e.g. /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_pmix_pmix2x.so), and petsc tests fail, reporting: cd src/snes/examples/tutorials >/dev/null; /usr/bin/make --no-print-directory PETSC_ARCH=x86_64-linux-gnu-real-debug PETSC_DIR=/home/drew/projects/petsc/build/petsc testex19 Possible error running C/C++ src/snes/examples/tutorials/ex19 with 1 MPI process See http://www.mcs.anl.gov/petsc/documentation/faq.html [grendel:25623] mca_base_component_repository_open: unable to open mca_pmix_pmix2x: /usr/lib/x86_64-linux-gnu/openmpi/lib/openmpi3/mca_pmix_pmix2x.so: undefined symbol: OPAL_MCA_PMIX2X_PMIx_Get_version (ignored) [grendel:25623] [[7790,0],0] ORTE_ERROR_LOG: Not found in file ess_hnp_module.c at line 325 -------------------------------------------------------------------------- It looks like orte_init failed for some reason; your parallel process is likely to abort. There are many reasons that a parallel process can fail during orte_init; some of which are due to configuration or environment problems. This failure appears to be an internal failure; here's some additional information (which may only be relevant to an Open MPI developer): opal_pmix_base_select failed --> Returned value Not found (-13) instead of ORTE_SUCCESS -------------------------------------------------------------------------- -- System Information: Debian Release: buster/sid APT prefers unstable APT policy: (500, 'unstable'), (1, 'experimental') Architecture: amd64 (x86_64) Foreign Architectures: i386 Kernel: Linux 4.16.0-2-amd64 (SMP w/4 CPU cores) Locale: LANG=en_AU.UTF-8, LC_CTYPE=en_AU.UTF-8 (charmap=UTF-8), LANGUAGE=en_AU.UTF-8 (charmap=UTF-8) Shell: /bin/sh linked to /bin/dash Init: systemd (via /run/systemd/system) LSM: AppArmor: enabled Versions of packages libopenmpi-dev depends on: ii libc6 2.27-4 ii libevent-2.1-6 2.1.8-stable-4 ii libevent-pthreads-2.1-6 2.1.8-stable-4 ii libhwloc-dev 1.11.10-2 ii libhwloc5 1.11.10-2 ii libibverbs-dev 19.0-1 ii libopenmpi3 3.1.1.real-2 ii openmpi-bin 3.1.1.real-2 ii openmpi-common 3.1.1.real-2 libopenmpi-dev recommends no packages. Versions of packages libopenmpi-dev suggests: pn openmpi-doc <none> -- no debconf information
