Package: libbio-tools-phylo-paml-perl Version: 1.7.3-1 Severity: serious User: debian...@lists.debian.org Usertags: piuparts
Hi, during a test with piuparts I noticed your package fails to upgrade from 'stable'. It installed fine in 'stable', then the upgrade to 'sid' fails because it tries to overwrite other packages files without declaring a Breaks+Replaces relation. See policy 7.6 at https://www.debian.org/doc/debian-policy/#overwriting-files-and-replacing-packages-replaces This test intentionally skipped 'testing' to find file overwrite problems before packages migrate from 'unstable' to 'testing'. >From the attached log (scroll to the bottom...): Selecting previously unselected package libbio-tools-phylo-paml-perl. Preparing to unpack .../libbio-tools-phylo-paml-perl_1.7.3-1_all.deb ... Unpacking libbio-tools-phylo-paml-perl (1.7.3-1) ... dpkg: error processing archive /var/cache/apt/archives/libbio-tools-phylo-paml-perl_1.7.3-1_all.deb (--unpack): trying to overwrite '/usr/share/man/man3/Bio::Tools::Phylo::PAML.3pm.gz', which is also in package libbio-perl-perl 1.7.1-2 Errors were encountered while processing: /var/cache/apt/archives/libbio-tools-phylo-paml-perl_1.7.3-1_all.deb Selecting previously unselected package libbio-tools-phylo-paml-perl. Preparing to unpack .../libbio-tools-phylo-paml-perl_1.7.3-1_all.deb ... Unpacking libbio-tools-phylo-paml-perl (1.7.3-1) ... dpkg: error processing archive /var/cache/apt/archives/libbio-tools-phylo-paml-perl_1.7.3-1_all.deb (--unpack): trying to overwrite '/usr/bin/bp_pairwise_kaks', which is also in package bioperl 1.7.1-2 dpkg-deb: error: subprocess paste was killed by signal (Broken pipe) Errors were encountered while processing: /var/cache/apt/archives/libbio-tools-phylo-paml-perl_1.7.3-1_all.deb The following files are taken over by libbio-tools-phylo-paml-perl: usr/share/man/man3/Bio::Tools::Phylo::PAML.3pm.gz usr/share/man/man3/Bio::Tools::Phylo::PAML::Codeml.3pm.gz usr/share/man/man3/Bio::Tools::Phylo::PAML::ModelResult.3pm.gz usr/share/man/man3/Bio::Tools::Phylo::PAML::Result.3pm.gz usr/share/perl5/Bio/Tools/Phylo/PAML.pm usr/share/perl5/Bio/Tools/Phylo/PAML/Codeml.pm usr/share/perl5/Bio/Tools/Phylo/PAML/ModelResult.pm usr/share/perl5/Bio/Tools/Phylo/PAML/Result.pm usr/bin/bp_pairwise_kaks usr/share/man/man1/bp_pairwise_kaks.1p.gz cheers, Andreas
libbio-perl-perl=1.7.1-2_libbio-tools-phylo-paml-perl=1.7.3-1.log.gz
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