Hi Ghislain,
since one of the Debian Med packages seems to be affected I tried to
upgrade h5py (see Git repository). Unfortunately it does not build:
...
running build_ext
Traceback (most recent call last):
File "setup.py", line 168, in <module>
cmdclass = CMDCLASS,
File "/usr/lib/python2.7/dist-packages/setuptools/__init__.py", line 129, in
setup
return distutils.core.setup(**attrs)
File "/usr/lib/python2.7/distutils/core.py", line 151, in setup
dist.run_commands()
File "/usr/lib/python2.7/distutils/dist.py", line 953, in run_commands
self.run_command(cmd)
File "/usr/lib/python2.7/distutils/dist.py", line 972, in run_command
cmd_obj.run()
File "/usr/lib/python2.7/distutils/command/build.py", line 128, in run
self.run_command(cmd_name)
File "/usr/lib/python2.7/distutils/cmd.py", line 326, in run_command
self.distribution.run_command(command)
File "/usr/lib/python2.7/distutils/dist.py", line 972, in run_command
cmd_obj.run()
File "/build/h5py-2.8.0/setup_build.py", line 156, in run
from Cython.Build import cythonize
File "/usr/lib/python2.7/dist-packages/Cython/Build/__init__.py", line 1, in
<module>
from .Dependencies import cythonize
File "/usr/lib/python2.7/dist-packages/Cython/Build/Dependencies.py", line
36, in <module>
from ..Compiler.Main import Context, CompilationOptions, default_options
File "/usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py", line 30, in
<module>
from .Symtab import ModuleScope
File "/usr/lib/python2.7/dist-packages/Cython/Compiler/Symtab.py", line 19,
in <module>
from . import PyrexTypes
File "/usr/lib/python2.7/dist-packages/Cython/Compiler/PyrexTypes.py", line
17, in <module>
from .Code import UtilityCode, LazyUtilityCode, TempitaUtilityCode
File "Cython/Compiler/Code.py", line 38, in init Cython.Compiler.Code
ImportError:
/usr/lib/python2.7/dist-packages/Cython/StringIOTree.x86_64-linux-gnu.so:
undefined symbol: Py_InitModule4_64
E: pybuild pybuild:336: build: plugin distutils failed with: exit code=1:
/usr/bin/python-dbg setup.py build
dh_auto_build: pybuild --build -i python{version}-dbg -p 2.7 returned exit code
13
make[1]: *** [debian/rules:22: override_dh_auto_build] Error 25
make[1]: Leaving directory '/build/h5py-2.8.0'
make: *** [debian/rules:10: build] Error 2
dpkg-buildpackage: error: debian/rules build gave error exit status 2
Can you please have a look?
Kind regards
Andreas.
--
http://fam-tille.de
