Hi, I'm using XFCE4, so that would be xfwm4. I did another thing: /usr/bin/invesalius3 is a shell script, so I executed those commands manuall in my shell. But instead of "python app.py", I ran gdb, and then the gdb commands "file python", "set args app.py", "run". When invesalius3 then crashed, I could then get a backtrace by running "bt", It gave the following output:
(gdb) bt #0 0x00007ffff3106202 in ?? () from /usr/lib/x86_64-linux-gnu/libgdk-3.so.0 #1 0x00007ffff313c47e in gdk_x11_window_get_xid () from /usr/lib/x86_64-linux-gnu/libgdk-3.so.0 #2 0x00007ffff6021251 in ?? () from /usr/lib/python2.7/dist-packages/wx-3.0-gtk3/wx/_core_.x86_64-linux-gnu.so #3 0x000055555564f874 in PyEval_EvalFrameEx () #4 0x0000555555646c7a in PyEval_EvalCodeEx () #5 0x000055555564edb4 in PyEval_EvalFrameEx () #6 0x000055555564e3e2 in PyEval_EvalFrameEx () #7 0x0000555555646c7a in PyEval_EvalCodeEx () #8 0x0000555555662b09 in ?? () #9 0x000055555567b2be in ?? () #10 0x000055555563290e in PyObject_Call () #11 0x00005555556529f0 in PyEval_CallObjectWithKeywords () #12 0x00007ffff5fa9e99 in wxPyCallback::EventThunker(wxEvent&) () from /usr/lib/python2.7/dist-packages/wx-3.0-gtk3/wx/_core_.x86_64-linux-gnu.so #13 0x00007ffff44438ce in wxEvtHandler::ProcessEventIfMatchesId(wxEventTableEntryBase const&, wxEvtHandler*, wxEvent&) () from /usr/lib/x86_64-linux-gnu/libwx_baseu-3.0.so.0 #14 0x00007ffff4443cda in wxEvtHandler::SearchDynamicEventTable(wxEvent&) () from /usr/lib/x86_64-linux-gnu/libwx_baseu-3.0.so.0 #15 0x00007ffff4443d6f in wxEvtHandler::TryHereOnly(wxEvent&) () from /usr/lib/x86_64-linux-gnu/libwx_baseu-3.0.so.0 #16 0x00007ffff4443e23 in wxEvtHandler::ProcessEventLocally(wxEvent&) () from /usr/lib/x86_64-linux-gnu/libwx_baseu-3.0.so.0 #17 0x00007ffff4443e85 in wxEvtHandler::ProcessEvent(wxEvent&) () from /usr/lib/x86_64-linux-gnu/libwx_baseu-3.0.so.0 #18 0x00007ffff4443be7 in wxEvtHandler::SafelyProcessEvent(wxEvent&) () from /usr/lib/x86_64-linux-gnu/libwx_baseu-3.0.so.0 #19 0x00007ffff4dd4557 in wxWindow::DoSetSize(int, int, int, int, int) () from /usr/lib/x86_64-linux-gnu/libwx_gtk3u_core-3.0.so.0 #20 0x00007ffff4f6329a in wxBoxSizer::RecalcSizes() () from /usr/lib/x86_64-linux-gnu/libwx_gtk3u_core-3.0.so.0 #21 0x00007ffff4f6111e in wxSizer::Layout() () from /usr/lib/x86_64-linux-gnu/libwx_gtk3u_core-3.0.so.0 #22 0x00007ffff4f60fb5 in wxSizerItem::SetDimension(wxPoint const&, wxSize const&) () from /usr/lib/x86_64-linux-gnu/libwx_gtk3u_core-3.0.so.0 #23 0x00007ffff4f6329a in wxBoxSizer::RecalcSizes() () from /usr/lib/x86_64-linux-gnu/libwx_gtk3u_core-3.0.so.0 #24 0x00007ffff4f6111e in wxSizer::Layout() () from /usr/lib/x86_64-linux-gnu/libwx_gtk3u_core-3.0.so.0 #25 0x00007ffff4f95436 in wxWindowBase::Layout() () from /usr/lib/x86_64-linux-gnu/libwx_gtk3u_core-3.0.so.0 #26 0x00007ffff4f8fe66 in wxWindowBase::InternalOnSize(wxSizeEvent&) () from /usr/lib/x86_64-linux-gnu/libwx_gtk3u_core-3.0.so.0 #27 0x00007ffff44438ce in wxEvtHandler::ProcessEventIfMatchesId(wxEventTableEntryBase const&, wxEvtHandler*, wxEvent&) () from /usr/lib/x86_64-linux-gnu/libwx_baseu-3.0.so.0 #28 0x00007ffff44439d3 in wxEventHashTable::HandleEvent(wxEvent&, wxEvtHandler*) () from /usr/lib/x86_64-linux-gnu/libwx_baseu-3.0.so.0 #29 0x00007ffff4443d9b in wxEvtHandler::TryHereOnly(wxEvent&) () from /usr/lib/x86_64-linux-gnu/libwx_baseu-3.0.so.0 #30 0x00007ffff4443e23 in wxEvtHandler::ProcessEventLocally(wxEvent&) () from /usr/lib/x86_64-linux-gnu/libwx_baseu-3.0.so.0 #31 0x00007ffff4443e85 in wxEvtHandler::ProcessEvent(wxEvent&) () from /usr/lib/x86_64-linux-gnu/libwx_baseu-3.0.so.0 #32 0x00007ffff4443be7 in wxEvtHandler::SafelyProcessEvent(wxEvent&) () from /usr/lib/x86_64-linux-gnu/libwx_baseu-3.0.so.0 #33 0x00007ffff4dd4557 in wxWindow::DoSetSize(int, int, int, int, int) () from /usr/lib/x86_64-linux-gnu/libwx_gtk3u_core-3.0.so.0 #34 0x00007ffff4dd661d in wxWindow::DoSetClientSize(int, int) () from /usr/lib/x86_64-linux-gnu/libwx_gtk3u_core-3.0.so.0 #35 0x00007ffff4f649a7 in wxSizer::Fit(wxWindow*) () from /usr/lib/x86_64-linux-gnu/libwx_gtk3u_core-3.0.so.0 #36 0x00007ffff6043941 in ?? () from /usr/lib/python2.7/dist-packages/wx-3.0-gtk3/wx/_core_.x86_64-linux-gnu.so #37 0x000055555564f874 in PyEval_EvalFrameEx () #38 0x0000555555646c7a in PyEval_EvalCodeEx () #39 0x000055555564edb4 in PyEval_EvalFrameEx () #40 0x000055555564e3e2 in PyEval_EvalFrameEx () #41 0x0000555555646c7a in PyEval_EvalCodeEx () #42 0x0000555555662b09 in ?? () #43 0x000055555567b2be in ?? () #44 0x000055555567aeca in ?? () #45 0x0000555555637afb in ?? () #46 0x000055555564e5d0 in PyEval_EvalFrameEx () #47 0x000055555564e3e2 in PyEval_EvalFrameEx () #48 0x0000555555646c7a in PyEval_EvalCodeEx () #49 0x0000555555662b09 in ?? () #50 0x000055555567b2be in ?? () #51 0x000055555567aeca in ?? () #52 0x0000555555637afb in ?? () #53 0x000055555564e5d0 in PyEval_EvalFrameEx () #54 0x000055555564e3e2 in PyEval_EvalFrameEx () #55 0x0000555555646c7a in PyEval_EvalCodeEx () #56 0x0000555555662b09 in ?? () #57 0x000055555567b2be in ?? () #58 0x000055555567aeca in ?? () #59 0x0000555555637afb in ?? () #60 0x000055555564e5d0 in PyEval_EvalFrameEx () #61 0x0000555555646c7a in PyEval_EvalCodeEx () #62 0x0000555555662d9d in ?? () #63 0x000055555563290e in PyObject_Call () #64 0x000055555564b6d3 in PyEval_EvalFrameEx () #65 0x000055555564e3e2 in PyEval_EvalFrameEx () #66 0x0000555555646c7a in PyEval_EvalCodeEx () #67 0x0000555555662b09 in ?? () #68 0x000055555567b2be in ?? () #69 0x000055555563290e in PyObject_Call () #70 0x00005555556529f0 in PyEval_CallObjectWithKeywords () #71 0x00007ffff5fa915e in wxPyCallbackHelper::callCallbackObj(_object*) const () from /usr/lib/python2.7/dist-packages/wx-3.0-gtk3/wx/_core_.x86_64-linux-gnu.so #72 0x00007ffff5fa91cd in wxPyCallbackHelper::callCallback(_object*) const () from /usr/lib/python2.7/dist-packages/wx-3.0-gtk3/wx/_core_.x86_64-linux-gnu.so #73 0x00007fffe8a05f03 in wxPyTimer::Notify() () from /usr/lib/python2.7/dist-packages/wx-3.0-gtk3/wx/_misc_.x86_64-linux-gnu.so #74 0x00007ffff4dcc2c1 in ?? () from /usr/lib/x86_64-linux-gnu/libwx_gtk3u_core-3.0.so.0 #75 0x00007ffff241bb73 in ?? () from /usr/lib/x86_64-linux-gnu/libglib-2.0.so.0 #76 0x00007ffff241b0f5 in g_main_context_dispatch () from /usr/lib/x86_64-linux-gnu/libglib-2.0.so.0 #77 0x00007ffff241b4c0 in ?? () from /usr/lib/x86_64-linux-gnu/libglib-2.0.so.0 #78 0x00007ffff241b7d2 in g_main_loop_run () from /usr/lib/x86_64-linux-gnu/libglib-2.0.so.0 #79 0x00007ffff35e3e85 in gtk_main () from /usr/lib/x86_64-linux-gnu/libgtk-3.so.0 #80 0x00007ffff4db9cc5 in wxGUIEventLoop::DoRun() () from /usr/lib/x86_64-linux-gnu/libwx_gtk3u_core-3.0.so.0 #81 0x00007ffff42ffea3 in wxEventLoopBase::Run() () from /usr/lib/x86_64-linux-gnu/libwx_baseu-3.0.so.0 #82 0x00007ffff42c74b6 in wxAppConsoleBase::MainLoop() () from /usr/lib/x86_64-linux-gnu/libwx_baseu-3.0.so.0 #83 0x00007ffff5faf027 in wxPyApp::MainLoop() () from /usr/lib/python2.7/dist-packages/wx-3.0-gtk3/wx/_core_.x86_64-linux-gnu.so #84 0x00007ffff600ad45 in ?? () from /usr/lib/python2.7/dist-packages/wx-3.0-gtk3/wx/_core_.x86_64-linux-gnu.so #85 0x000055555564f874 in PyEval_EvalFrameEx () #86 0x0000555555646c7a in PyEval_EvalCodeEx () #87 0x0000555555662b09 in ?? () #88 0x000055555567b2be in ?? () #89 0x000055555564e5d0 in PyEval_EvalFrameEx () #90 0x000055555564e3e2 in PyEval_EvalFrameEx () #91 0x000055555564e3e2 in PyEval_EvalFrameEx () #92 0x0000555555646c7a in PyEval_EvalCodeEx () #93 0x0000555555646709 in PyEval_EvalCode () #94 0x000055555567771f in ?? () #95 0x0000555555672472 in PyRun_FileExFlags () #96 0x00005555556718ed in PyRun_SimpleFileExFlags () #97 0x0000555555620a2b in Py_Main () #98 0x00007ffff6e69a87 in __libc_start_main () from /lib/x86_64-linux-gnu/libc.so.6 #99 0x00005555556202aa in _start () (gdb) quit if this is useful... Best regards, Torquil Sørensen On 15/06/18 23:19, Thiago Franco Moraes wrote: > Hi, > > What window manager are your using? I don't why yet, but this error > doesn't happen if you use KDE as window manager. It's happening also > with the git version (https://github.com/invesalius/invesalius3). If > you use the WXPython4 this doesn't happen, but you need to use the git > version. > > Thanks for the bug report. > On Thu, Jun 14, 2018 at 3:27 PM Torquil Macdonald Sørensen > <torq...@gmail.com> wrote: >> Package: invesalius >> Version: 3.1.1-3 >> Severity: grave >> Justification: renders package unusable >> >> When trying to run invesalius, I get this segmentation fault: >> >> torquil@lenovo-p51:~$ invesalius3 >> /usr/share/invesalius/invesalius/data/transformations.py:1899: UserWarning: >> failed to import module _transformations >> warnings.warn("failed to import module %s" % name) >> session mode: 0 >> Segmentation fault >> torquil@lenovo-p51:~$ >> >> Best regards, >> Torquil Sørensen >> >> -- System Information: >> Debian Release: buster/sid >> APT prefers unstable >> APT policy: (500, 'unstable') >> Architecture: amd64 (x86_64) >> >> Kernel: Linux 4.16.0-2-amd64 (SMP w/8 CPU cores) >> Locale: LANG=en_GB.UTF-8, LC_CTYPE=en_GB.UTF-8 (charmap=UTF-8), >> LANGUAGE=en_GB:en (charmap=UTF-8) >> Shell: /bin/sh linked to /bin/dash >> Init: systemd (via /run/systemd/system) >> >> Versions of packages invesalius depends on: >> ii invesalius-bin 3.1.1-3 >> ii python 2.7.15-3 >> ii python-concurrent.futures 3.2.0-1 >> ii python-configparser 3.5.0-1 >> ii python-gdcm 2.8.6-2 >> ii python-nibabel 2.3.0-1 >> ii python-numpy 1:1.14.5-1 >> ii python-pil 5.1.0-1 >> ii python-psutil 5.4.6-1 >> ii python-scipy 0.19.1-2 >> ii python-serial 3.4-3 >> ii python-skimage 0.13.1-3 >> ii python-vtk6 6.3.0+dfsg2-2+b2 >> ii python-vtkgdcm 2.8.6-2 >> ii python-wxgtk3.0 3.0.2.0+dfsg-8 >> ii python2.7 2.7.15-1 >> >> invesalius recommends no packages. >> >> invesalius suggests no packages. >> >> -- no debconf information
