Your message dated Fri, 06 Apr 2018 18:20:21 +0000 with message-id <[email protected]> and subject line Bug#893251: fixed in jabref 3.8.2+ds-3 has caused the Debian Bug report #893251, regarding jabref: doesn't start with liblog4j2-java 2.10.0-1 to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact [email protected] immediately.) -- 893251: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=893251 Debian Bug Tracking System Contact [email protected] with problems
--- Begin Message ---Package: jabref Version: 3.8.2+ds-2 Severity: important Dear Maintainer, JabRef is currently not working. The script in /usr/bin/jabref requires "java8". But this need is ignored and version 9 is used. Because of that there are some errors. I don'T know how to make the installed JabRef run again with "java8". $ DEBUG_WRAPPER=1 jabref --debug [debug] /usr/bin/jabref: Picking up the JVM designated by the alternatives system: [debug] /usr/bin/jabref: JAVA_HOME = '/usr/lib/jvm/java-9-openjdk-amd64' [debug] /usr/bin/jabref: Found JAVA_HOME = '/usr/lib/jvm/java-9-openjdk-amd64' [debug] /usr/bin/jabref: Found JAVA_CMD = '/usr/lib/jvm/java-9-openjdk- amd64/bin/java' /usr/lib/jvm/java-9-openjdk-amd64/bin/java [warning] /usr/bin/jabref: /usr/lib/jvm/java-9-openjdk-amd64/bin/java [debug] /usr/bin/jabref: Environment variable CLASSPATH is '' [debug] /usr/bin/jabref: Runnning /usr/lib/jvm/java-9-openjdk-amd64/bin/java -classpath /usr/share/java/jabref.jar:/usr/share/java/bcprov.jar:/usr/share/java/antlr3-runtime.jar:/usr/share/java/antlr4-runtime.jar:/usr/share/java/com.android.json.jar:/usr/share/java/commons- cli.jar:/usr/share/java/commons-codec.jar:/usr/share/java/commons- lang3.jar:/usr/share/java/commons- logging.jar:/usr/share/java/fontbox.jar:/usr/share/java/glazedlists.jar:/usr/share/java/guava.jar:/usr/share/java/httpasyncclient.jar:/usr/share/java/httpclient.jar:/usr/share/java/httpcore.jar:/usr/share/java/httpcore- nio.jar:/usr/share/java/httpmime.jar:/usr/share/java/java-string- similarity.jar:/usr/share/java/jempbox.jar:/usr/share/java/jgoodies- common.jar:/usr/share/java/jgoodies-forms.jar:/usr/share/java/jgoodies- looks.jar:/usr/share/java/jhlabs- filters.jar:/usr/share/java/jsoup.jar:/usr/share/java/juh.jar:/usr/share/java/jurt.jar:/usr/share/java/log4j-api.jar:/usr/share/java/log4j-core.jar:/usr/share/java/log4j-jcl.jar:/usr/share/java/microba.jar:/usr/share/java/mysql- connector- java.jar:/usr/share/java/pdfbox.jar:/usr/share/java/postgresql.jar:/usr/share/java/ridl.jar:/usr/share/java/spin.jar:/usr/share/java/swingx.jar:/usr/share/java/swing- layout.jar:/usr/share/java/unirest-java.jar:/usr/share/java/unoil.jar net.sf.jabref.JabRefMain --debug 15:27:50.292 [AWT-EventQueue-0] ERROR net.sf.jabref.FallbackExceptionHandler - Uncaught exception Occurred in Thread[AWT-EventQueue-0,6,main] java.lang.NoClassDefFoundError: javax/xml/bind/JAXBException at net.sf.jabref.logic.importer.ImportFormatReader.resetImportFormats(ImportFormatReader.java:56) ~[JabRef-3.8.2.jar:?] at net.sf.jabref.JabRefMain.start(JabRefMain.java:78) ~[JabRef-3.8.2.jar:?] at net.sf.jabref.JabRefMain.lambda$main$0(JabRefMain.java:40) ~[JabRef-3.8.2.jar:?] at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:313) ~[?:?] at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:764) ~[?:?] at java.awt.EventQueue.access$500(EventQueue.java:97) ~[?:?] at java.awt.EventQueue$3.run(EventQueue.java:717) ~[?:?] at java.awt.EventQueue$3.run(EventQueue.java:711) ~[?:?] at java.security.AccessController.doPrivileged(Native Method) ~[?:?] at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:89) ~[?:?] at java.awt.EventQueue.dispatchEvent(EventQueue.java:734) ~[?:?] at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:199) [?:?] at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:124) [?:?] at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:113) [?:?] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:109) [?:?] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101) [?:?] at java.awt.EventDispatchThread.run(EventDispatchThread.java:90) [?:?] Caused by: java.lang.ClassNotFoundException: javax.xml.bind.JAXBException at jdk.internal.loader.BuiltinClassLoader.loadClass(BuiltinClassLoader.java:582) ~[?:?] at jdk.internal.loader.ClassLoaders$AppClassLoader.loadClass(ClassLoaders.java:185) ~[?:?] at java.lang.ClassLoader.loadClass(ClassLoader.java:496) ~[?:?] ... 17 more $ DEBUG_WRAPPER=1 JAVA_HOME=/usr/lib/jvm/java-8-openjdk-amd64/ jabref --debug [debug] /usr/bin/jabref: Using provided JAVA_HOME = '/usr/lib/jvm/java-8-openjdk-amd64/' [debug] /usr/bin/jabref: Found JAVA_HOME = '/usr/lib/jvm/java-8-openjdk-amd64/' [debug] /usr/bin/jabref: Found JAVA_CMD = '/usr/lib/jvm/java-8-openjdk- amd64//bin/java' /usr/lib/jvm/java-8-openjdk-amd64//bin/java [warning] /usr/bin/jabref: /usr/lib/jvm/java-8-openjdk-amd64//bin/java [debug] /usr/bin/jabref: Environment variable CLASSPATH is '' [debug] /usr/bin/jabref: Runnning /usr/lib/jvm/java-8-openjdk-amd64//bin/java -classpath /usr/share/java/jabref.jar:/usr/share/java/bcprov.jar:/usr/share/java/antlr3-runtime.jar:/usr/share/java/antlr4-runtime.jar:/usr/share/java/com.android.json.jar:/usr/share/java/commons- cli.jar:/usr/share/java/commons-codec.jar:/usr/share/java/commons- lang3.jar:/usr/share/java/commons- logging.jar:/usr/share/java/fontbox.jar:/usr/share/java/glazedlists.jar:/usr/share/java/guava.jar:/usr/share/java/httpasyncclient.jar:/usr/share/java/httpclient.jar:/usr/share/java/httpcore.jar:/usr/share/java/httpcore- nio.jar:/usr/share/java/httpmime.jar:/usr/share/java/java-string- similarity.jar:/usr/share/java/jempbox.jar:/usr/share/java/jgoodies- common.jar:/usr/share/java/jgoodies-forms.jar:/usr/share/java/jgoodies- looks.jar:/usr/share/java/jhlabs- filters.jar:/usr/share/java/jsoup.jar:/usr/share/java/juh.jar:/usr/share/java/jurt.jar:/usr/share/java/log4j-api.jar:/usr/share/java/log4j-core.jar:/usr/share/java/log4j-jcl.jar:/usr/share/java/microba.jar:/usr/share/java/mysql- connector- java.jar:/usr/share/java/pdfbox.jar:/usr/share/java/postgresql.jar:/usr/share/java/ridl.jar:/usr/share/java/spin.jar:/usr/share/java/swingx.jar:/usr/share/java/swing- layout.jar:/usr/share/java/unirest-java.jar:/usr/share/java/unoil.jar net.sf.jabref.JabRefMain --debug Exception in thread "main" java.lang.NoSuchMethodError: java.nio.ByteBuffer.flip()Ljava/nio/ByteBuffer; at org.apache.logging.log4j.core.appender.OutputStreamManager.flushBuffer(OutputStreamManager.java:292) at org.apache.logging.log4j.core.appender.OutputStreamManager.flush(OutputStreamManager.java:303) at org.apache.logging.log4j.core.appender.OutputStreamManager.closeOutputStream(OutputStreamManager.java:308) at org.apache.logging.log4j.core.appender.OutputStreamManager.releaseSub(OutputStreamManager.java:137) at org.apache.logging.log4j.core.appender.AbstractManager.stop(AbstractManager.java:86) at org.apache.logging.log4j.core.appender.AbstractOutputStreamAppender.stop(AbstractOutputStreamAppender.java:142) at org.apache.logging.log4j.core.appender.AbstractOutputStreamAppender.stop(AbstractOutputStreamAppender.java:136) at org.apache.logging.log4j.core.config.AbstractConfiguration.stop(AbstractConfiguration.java:359) at org.apache.logging.log4j.core.AbstractLifeCycle.stop(AbstractLifeCycle.java:136) at org.apache.logging.log4j.core.LoggerContext.setConfiguration(LoggerContext.java:550) at org.apache.logging.log4j.core.LoggerContext.reconfigure(LoggerContext.java:617) at org.apache.logging.log4j.core.LoggerContext.reconfigure(LoggerContext.java:634) at org.apache.logging.log4j.core.LoggerContext.start(LoggerContext.java:229) at org.apache.logging.log4j.core.impl.Log4jContextFactory.getContext(Log4jContextFactory.java:153) at org.apache.logging.log4j.core.impl.Log4jContextFactory.getContext(Log4jContextFactory.java:45) at org.apache.logging.log4j.LogManager.getContext(LogManager.java:194) at org.apache.logging.log4j.spi.AbstractLoggerAdapter.getContext(AbstractLoggerAdapter.java:122) at org.apache.logging.log4j.jcl.LogAdapter.getContext(LogAdapter.java:39) at org.apache.logging.log4j.spi.AbstractLoggerAdapter.getLogger(AbstractLoggerAdapter.java:46) at org.apache.logging.log4j.jcl.LogFactoryImpl.getInstance(LogFactoryImpl.java:40) at org.apache.logging.log4j.jcl.LogFactoryImpl.getInstance(LogFactoryImpl.java:55) at org.apache.commons.logging.LogFactory.getLog(LogFactory.java:655) at net.sf.jabref.JabRefMain.<clinit>(JabRefMain.java:37) $ dpkg -l "openjdk*" Gewünscht=Unbekannt/Installieren/R=Entfernen/P=Vollständig Löschen/Halten | Status=Nicht/Installiert/Config/U=Entpackt/halb konFiguriert/ Halb installiert/Trigger erWartet/Trigger anhängig |/ Fehler?=(kein)/R=Neuinstallation notwendig (Status, Fehler: GROSS=schlecht) ||/ Name Version Architektur Beschreibung +++-======================================-========================-========================-================================================================================== un openjdk-6-jre <keine> <keine> (keine Beschreibung vorhanden) un openjdk-6-jre-headless <keine> <keine> (keine Beschreibung vorhanden) un openjdk-8-demo <keine> <keine> (keine Beschreibung vorhanden) ii openjdk-8-jdk:amd64 8u162-b12-1 amd64 OpenJDK Development Kit (JDK) ii openjdk-8-jdk-headless:amd64 8u162-b12-1 amd64 OpenJDK Development Kit (JDK) (headless) ii openjdk-8-jre:amd64 8u162-b12-1 amd64 OpenJDK Java runtime, using Hotspot JIT ii openjdk-8-jre-headless:amd64 8u162-b12-1 amd64 OpenJDK Java runtime, using Hotspot JIT (headless) un openjdk-8-source <keine> <keine> (keine Beschreibung vorhanden) un openjdk-9-demo <keine> <keine> (keine Beschreibung vorhanden) ii openjdk-9-jdk:amd64 9.0.4+12-2 amd64 OpenJDK Development Kit (JDK) ii openjdk-9-jdk-headless:amd64 9.0.4+12-2 amd64 OpenJDK Development Kit (JDK) (headless) ii openjdk-9-jre:amd64 9.0.4+12-2 amd64 OpenJDK Java runtime, using Hotspot JIT ii openjdk-9-jre-headless:amd64 9.0.4+12-2 amd64 OpenJDK Java runtime, using Hotspot JIT (headless) un openjdk-9-source <keine> <keine> (keine Beschreibung vorhanden) -- System Information: Debian Release: buster/sid APT prefers unstable APT policy: (500, 'unstable') Architecture: amd64 (x86_64) Foreign Architectures: i386 Kernel: Linux 4.15.10-towo.1-siduction-amd64 (SMP w/4 CPU cores; PREEMPT) Locale: LANG=de_DE.utf8, LC_CTYPE=de_DE.utf8 (charmap=UTF-8), LANGUAGE=de_DE.utf8 (charmap=UTF-8) Shell: /bin/sh linked to /bin/dash Init: systemd (via /run/systemd/system) Versions of packages jabref depends on: ii default-jre [java8-runtime] 2:1.9-61 ii java-wrappers 0.2 ii libandroid-json-java 7.0.0+r33-1 ii libantlr3-runtime-java 3.5.2-8 ii libantlr4-runtime-java 4.5.3-2 ii libbcprov-java 1.59-1 ii libcommons-cli-java 1.4-1 ii libcommons-lang3-java 3.5-1 ii libcommons-logging-java 1.2-2 ii libglazedlists-java 1.9.1-2 ii libguava-java 19.0-1 ii libhttpasyncclient-java 4.1.3-1 ii libhttpclient-java 4.5.5-1 ii libhttpmime-java 4.5.5-1 ii libjava-string-similarity-java 0.24-1 ii libjempbox-java 1:1.8.13-2 ii libjgoodies-common-java 1.8.1-2 ii libjgoodies-forms-java 1.9.0-3 ii libjgoodies-looks-java 2.7.0-2 ii libjhlabs-filters-java 2.0.235-3 ii libjsoup-java 1.10.2-1 ii liblog4j2-java 2.10.0-1 ii libmicroba-java 1:0.4.4.3-5 ii libpdfbox-java 1:1.8.13-2 ii libreoffice-java-common 1:6.0.2-1 ii libspin-java 1.5+dfsg-8 ii libswing-layout-java 1.0.4-4 ii libswingx-java 1:1.6.2-3 ii libunirest-java-java 1.4.8-2 ii openjdk-8-jre [java8-runtime] 8u162-b12-1 ii openjdk-9-jre [java8-runtime] 9.0.4+12-2 Versions of packages jabref recommends: ii libmysql-java 5.1.45-1 ii libpostgresql-jdbc-java 9.4.1212-1 ii libreoffice-writer 1:6.0.2-1+b1 ii xdg-utils 1.1.2-2 Versions of packages jabref suggests: ii evince [postscript-viewer] 3.27.92-1 ii ghostscript [postscript-viewer] 9.22~dfsg-2 ii mupdf [pdf-viewer] 1.12.0+ds1-1 ii xpdf [pdf-viewer] 3.04-7 -- no debconf information -- debsums errors found: debsums: changed file /usr/bin/jabref (from jabref package)
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--- Begin Message ---Source: jabref Source-Version: 3.8.2+ds-3 We believe that the bug you reported is fixed in the latest version of jabref, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to [email protected], and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. gregor herrmann <[email protected]> (supplier of updated jabref package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing [email protected]) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 1.8 Date: Fri, 06 Apr 2018 19:54:48 +0200 Source: jabref Binary: jabref Architecture: source Version: 3.8.2+ds-3 Distribution: unstable Urgency: medium Maintainer: Debian Java Maintainers <[email protected]> Changed-By: gregor herrmann <[email protected]> Closes: 890905 893251 Description: jabref - graphical frontend to manage BibTeX and BibLaTeX databases Changes: jabref (3.8.2+ds-3) unstable; urgency=medium . * Force openjdk-8 at buildtime and runtime. JabRef doesn't build and run with openjdk-9 which is the default now. (Closes: #890905) * Make (build) dependency on liblog4j2-java versioned. (Closes: #893251) * Update years of packaging copyright. * debian/copyright: use HTTPS for a couple of URLs. Thanks to duck. * Declare compliance with Debian Policy 4.1.4. Checksums-Sha1: ea7f31c3fd0f541e822401884d086f8a34c8e7ac 2792 jabref_3.8.2+ds-3.dsc 39148d63b76e90a18ac9e0fd00a31c1eacb1be40 46176 jabref_3.8.2+ds-3.debian.tar.xz Checksums-Sha256: e2c4aa2449e55090923ffce89f87f8bbbe07ddcbec293a4d4f725423444d5ace 2792 jabref_3.8.2+ds-3.dsc 5730156271c3f14c00ea31ec62a2186bddf6d3b0622d928c0968bafd9667e4b5 46176 jabref_3.8.2+ds-3.debian.tar.xz Files: 84d2c6a35d9b9ef048d9bbf5637f0508 2792 tex optional jabref_3.8.2+ds-3.dsc 675f506fdb6666ad04be7310046e6263 46176 tex optional jabref_3.8.2+ds-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQKTBAEBCgB9FiEE0eExbpOnYKgQTYX6uzpoAYZJqgYFAlrHtWxfFIAAAAAALgAo aXNzdWVyLWZwckBub3RhdGlvbnMub3BlbnBncC5maWZ0aGhvcnNlbWFuLm5ldEQx RTEzMTZFOTNBNzYwQTgxMDREODVGQUJCM0E2ODAxODY0OUFBMDYACgkQuzpoAYZJ qgYlbQ//Qee5kqYuFgHElc8FkPkZrdbMGPh74RVSlmkO5sGjnD7TkSIZYePY1fdr 4cLx+8E2MfZC5416RyghX/Y7QrSPZ7ss4iOXJda8NsWcAp7CWUJ/xtgLxoDgU+kn cNwLY+UN1vA5WZ7m491fPs/a3OE8RdYujtVQ5sv6Z6Et0m/3AI2CFdMNz7yyxnMZ lHvRmfOvy7rYYqgasPFN/mpXHB83oJXQ3cz+rRczBBrQY/iVN59K15XhNSB/qP6v 388VOE2+dFec8cscYcFlx03bxZSE3Gqugc32eXHEhA6OoNMwY/JqVPtqP7S9sCoL EkxhZg5XJo0lqdqLwBzXWrhdHnLkIx0gRIO0Gj9jy5C7AOCeUoq+sjGk5pMqFIgq xaXqna+SCn7kps2iGfKCXgi1/uzgc833u6HPsPMycpQvOMUgndvvflQKbJIaczBr 1X2tipZWVB8U8dYTX0WddgTY3j4VAwKqESAPNmQfKDXXKW0367bHdSU2c05yAjtK sXPCIboGUT+AKMRWSVfxjQUK/K4rYe7e3zu00DAeWwb/qttWUpmAIg7gDER3cJyw OqsG8UoY6XxKEPKHbZNBdzB0qho11+rrbojCAwieXADzBY2aeS+XStn/Dkbwfpi9 sD0u3GhwAEgX2g+1hXvl7DEQIPauhz86PLL/f+Yn9gEEIDBeomM= =TGET -----END PGP SIGNATURE-----
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