Your message dated Mon, 05 Mar 2018 16:09:12 +0000
with message-id <[email protected]>
and subject line Bug#891745: fixed in libseqlib 1.1.1+dfsg-4
has caused the Debian Bug report #891745,
regarding libseqlib-dev: /usr/include/SeqLib/BamWalker.h includes file
locations no longer provided by libhts-dev
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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--
891745: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=891745
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: libseqlib-dev
Version: 1.1.1+dfsg-3
Severity: serious
Control: affects -1 src:freebayes
freebayes FTBFS:
https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/freebayes.html
...
g++ -O3 -D_FILE_OFFSET_BITS=64 -g -std=gnu++11 -I../ttmath
-I/usr/include/bamtools `pkg-config --cflags libvcflib` `pkg-config --cflags
libseqlib` `pkg-config --cflags htslib` `pkg-config --cflags jsoncpp` -c
DataLikelihood.cpp
In file included from /usr/include/SeqLib/BamReader.h:6:0,
from LeftAlign.h:99,
from AlleleParser.h:30,
from DataLikelihood.h:20,
from DataLikelihood.cpp:1:
/usr/include/SeqLib/BamWalker.h:15:10: fatal error: htslib/cram/cram.h: No such
file or directory
#include "htslib/cram/cram.h"
^~~~~~~~~~~~~~~~~~~~
compilation terminated.
make[2]: *** [Makefile:127: DataLikelihood.o] Error 1
--- End Message ---
--- Begin Message ---
Source: libseqlib
Source-Version: 1.1.1+dfsg-4
We believe that the bug you reported is fixed in the latest version of
libseqlib, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <[email protected]> (supplier of updated libseqlib package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Mon, 05 Mar 2018 16:25:15 +0100
Source: libseqlib
Binary: libseqlib0 libseqlib-dev
Architecture: source
Version: 1.1.1+dfsg-4
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Andreas Tille <[email protected]>
Description:
libseqlib-dev - C++ htslib/bwa-mem/fermi interface for interrogating sequence
dat
libseqlib0 - C++ htslib/bwa-mem/fermi interface for interrogating sequence dat
Closes: 891745
Changes:
libseqlib (1.1.1+dfsg-4) unstable; urgency=medium
.
* Make sure also private headers of htslib will be installed and usable
since these are used in libseqlib-dev
Closes: #891745
* Standards-Version: 4.1.3
* debhelper 11
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