Your message dated Mon, 04 Dec 2017 09:43:31 +0000
with message-id <[email protected]>
and subject line Bug#882349: fixed in sra-sdk 2.8.2-3+dfsg-1
has caused the Debian Bug report #882349,
regarding sra-sdk FTBFS with glibc 2.25
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
882349: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=882349
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: sra-sdk
Version: 2.8.1-2+dfsg-2
Severity: serious
Tags: buster sid
Forwarded: https://github.com/ncbi/sra-tools/issues/67
https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/sra-sdk.html
...
/build/1st/sra-sdk-2.8.1-2+dfsg/tools/bam-loader/bam.c:3998:17: error:
conflicting types for 'canonicalize'
static unsigned canonicalize(uint32_t cigar[], unsigned n)
^~~~~~~~~~~~
In file included from /usr/include/features.h:406:0,
from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33,
from /usr/include/stdint.h:26,
from /usr/lib/gcc/x86_64-linux-gnu/7/include/stdint.h:9,
from /usr/include/ncbi-vdb/kfc/defs.h:34,
from /usr/include/ncbi-vdb/klib/defs.h:31,
from /build/1st/sra-sdk-2.8.1-2+dfsg/tools/bam-loader/bam.c:27:
/usr/include/x86_64-linux-gnu/bits/mathcalls.h:435:1: note: previous
declaration of 'canonicalize' was here
__MATHDECL_1 (int, canonicalize,, (_Mdouble_ *__cx, const _Mdouble_ *__x));
^
/build/1st/sra-sdk-2.8.1-2+dfsg/tools/bam-loader/bam.c:2990:17: warning:
'SequenceLengthFromCIGAR' defined but not used [-Wunused-function]
static unsigned SequenceLengthFromCIGAR(const BAM_Alignment *self)
^~~~~~~~~~~~~~~~~~~~~~~
/build/1st/sra-sdk-2.8.1-2+dfsg/build/Makefile.rules:31: recipe for target
'bam.o' failed
make[5]: *** [bam.o] Error 1
--- End Message ---
--- Begin Message ---
Source: sra-sdk
Source-Version: 2.8.2-3+dfsg-1
We believe that the bug you reported is fixed in the latest version of
sra-sdk, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <[email protected]> (supplier of updated sra-sdk package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Mon, 04 Dec 2017 08:29:02 +0100
Source: sra-sdk
Binary: sra-toolkit
Architecture: source
Version: 2.8.2-3+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Andreas Tille <[email protected]>
Description:
sra-toolkit - utilities for the NCBI Sequence Read Archive
Closes: 882349
Changes:
sra-sdk (2.8.2-3+dfsg-1) unstable; urgency=medium
.
[ Steffen Moeller ]
* debian/upstream/metadata:
- added references to registries
- yamllint cleanliness
.
[ Andreas Tille ]
* New upstream version
* cme fix dpkg-control
* Standards-Version: 4.1.1
* debhelper 10
* renamed function to resolve name clash with gnutards to avoid
FTBFS with glibc 2.25
Closes: #882349
* Drop test that should not run as root
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