Your message dated Wed, 08 Nov 2017 07:50:18 +0000
with message-id <[email protected]>
and subject line Bug#877670: fixed in htslib 1.5-2
has caused the Debian Bug report #877670,
regarding bcftools FTBFS on armel, armhf and ppc64el
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
877670: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=877670
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: bcftools
Version: 1.5-1
Severity: serious
The new version of bcftools no longer builds on ppc64el, it is suffering from
test failures.
test_mpileup:
/<<PKGBUILDDIR>>/bcftools mpileup -a AD -f /<<PKGBUILDDIR>>/test/mpileup/indel-AD.1.fa
/<<PKGBUILDDIR>>/test/mpileup/indel-AD.1.bam 2>/dev/null | grep -v ^##bcftools | grep -v ^##reference
The outputs differ:
/<<PKGBUILDDIR>>/test/mpileup/indel-AD.1.out
/<<PKGBUILDDIR>>/test/mpileup/indel-AD.1.out.new
.. failed ...
test_mpileup:
/<<PKGBUILDDIR>>/bcftools mpileup -a AD -f /<<PKGBUILDDIR>>/test/mpileup/indel-AD.1.fa -Ob
/<<PKGBUILDDIR>>/test/mpileup/indel-AD.1.bam 2>/dev/null | /<<PKGBUILDDIR>>/bcftools view | grep -v
^##bcftools | grep -v ^##reference
The outputs differ:
/<<PKGBUILDDIR>>/test/mpileup/indel-AD.1.out
/<<PKGBUILDDIR>>/test/mpileup/indel-AD.1.out.new
.. failed ...
test_mpileup:
/<<PKGBUILDDIR>>/bcftools mpileup -a AD -f /<<PKGBUILDDIR>>/test/mpileup/indel-AD.1.fa
/<<PKGBUILDDIR>>/test/mpileup/indel-AD.1.cram 2>/dev/null | grep -v ^##bcftools | grep -v ^##reference
The outputs differ:
/<<PKGBUILDDIR>>/test/mpileup/indel-AD.1.out
/<<PKGBUILDDIR>>/test/mpileup/indel-AD.1.out.new
.. failed ...
test_mpileup:
/<<PKGBUILDDIR>>/bcftools mpileup -a AD -f /<<PKGBUILDDIR>>/test/mpileup/indel-AD.1.fa -Ob
/<<PKGBUILDDIR>>/test/mpileup/indel-AD.1.cram 2>/dev/null | /<<PKGBUILDDIR>>/bcftools view | grep -v
^##bcftools | grep -v ^##reference
The outputs differ:
/<<PKGBUILDDIR>>/test/mpileup/indel-AD.1.out
/<<PKGBUILDDIR>>/test/mpileup/indel-AD.1.out.new
.. failed ...
--- End Message ---
--- Begin Message ---
Source: htslib
Source-Version: 1.5-2
We believe that the bug you reported is fixed in the latest version of
htslib, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <[email protected]> (supplier of updated htslib package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Wed, 08 Nov 2017 08:24:26 +0100
Source: htslib
Binary: libhts2 libhts-dev htslib-test tabix
Architecture: source all amd64
Version: 1.5-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Andreas Tille <[email protected]>
Description:
htslib-test - Test data for HTSlib
libhts-dev - Development files for the HTSlib
libhts2 - C library for high-throughput sequencing data formats
tabix - generic indexer for TAB-delimited genome position files
Closes: 877670
Changes:
htslib (1.5-2) unstable; urgency=medium
.
* Apply patch provided by Graham Inggs <[email protected]> to fix FTBFS
on armel armhf and ppc64el of bcftools
Closes: #877670
* Standards-Version: 4.1.1
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Files:
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