Your message dated Tue, 07 Nov 2017 11:05:47 +0000
with message-id <e1ec1ht-000fnh...@fasolo.debian.org>
and subject line Bug#880236: fixed in python-biopython 1.70+dfsg-3
has caused the Debian Bug report #880236,
regarding python-biopython: FTBFS: Test failures
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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immediately.)
--
880236: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=880236
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: python-biopython
Version: 1.70+dfsg-2
Severity: serious
Tags: buster sid
User: debian...@lists.debian.org
Usertags: qa-ftbfs-20171030 qa-ftbfs
Justification: FTBFS on amd64
Hi,
During a rebuild of all packages in sid, your package failed to build on
amd64.
Relevant part (hopefully):
> cp -a Doc/Tutorial.tex
> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Doc; \
> cp -a Doc/Tutorial
> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Doc; \
> cp -a Doc/examples
> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Doc; \
> cp -a Tests
> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build; \
> cd
> /<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/Tests; \
> env DIALIGN2_DIR=/usr/share/dialign
> EMBOSS_ROOT=/usr/lib/emboss
> HOME=/<<BUILDDIR>>/python-biopython-1.70+dfsg/.pybuild/pythonX.Y_2.7/build/home
> python2.7 run_tests.py --offline
> dh_auto_test: pybuild --test -i python{version} -p 2.7 --test --system=custom
> "--test-args=set -e; \\\
> mkdir -p {build_dir}/home; \\\
> mkdir -p {build_dir}/Doc/examples; \\\
> cp -a Doc/Tutorial.tex {build_dir}/Doc; \\\
> cp -a Doc/Tutorial {build_dir}/Doc; \\\
> cp -a Doc/examples {build_dir}/Doc; \\\
> cp -a Tests {build_dir}; \\\
> cd {build_dir}/Tests; \\\
> env DIALIGN2_DIR=/usr/share/dialign
> EMBOSS_ROOT=/usr/lib/emboss HOME={build_dir}/home {interpreter} run_tests.py
> --offline" returned exit code 13
> debian/rules:96: recipe for target 'override_dh_auto_test' failed
The full build log is available from:
http://aws-logs.debian.net/2017/10/30/python-biopython_1.70+dfsg-2_unstable.log
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
About the archive rebuild: The rebuild was done on EC2 VM instances from
Amazon Web Services, using a clean, minimal and up-to-date chroot. Every
failed build was retried once to eliminate random failures.
--- End Message ---
--- Begin Message ---
Source: python-biopython
Source-Version: 1.70+dfsg-3
We believe that the bug you reported is fixed in the latest version of
python-biopython, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 880...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <ti...@debian.org> (supplier of updated python-biopython package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Tue, 07 Nov 2017 13:24:21 +0100
Source: python-biopython
Binary: python-biopython python3-biopython python-biopython-doc
python-biopython-sql python3-biopython-sql
Architecture: source
Version: 1.70+dfsg-3
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
python-biopython - Python library for bioinformatics (implemented in Python 2)
python-biopython-doc - Documentation for the Biopython library
python-biopython-sql - Biopython support for the BioSQL database schema
(Python 2)
python3-biopython - Python library for bioinformatics (implemented in Python 3)
python3-biopython-sql - Biopython support for the BioSQL database schema
(Python 3)
Closes: 872222 880236
Changes:
python-biopython (1.70+dfsg-3) unstable; urgency=medium
.
* Copy *.rst doc files.
Closes: #872222
* Apply two upstream patches to deal with change in BWA output
Closes: #880236
* Drop duplicated python*-numpy in Build-Depends
* Standards-Version: 4.1.1
* Fix permission of dtd files
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