Package: sambamba Version: 0.6.6-1 Severity: serious Tags: buster sid Justification: FTBFS on amd64
Hi, Dear Maintainer, sambamba FTBFS with ldc 1.4.0 on sid. https://buildd.debian.org/status/fetch.php?pkg=sambamba&arch=amd64&ver=0.6.6-1%2Bb1&stamp=1507088043&raw=0 ----- [1/74] ldc2 -Isambamba@exe -I. -I.. -I/usr/include/d/ -I/usr/include/htslib -enable-color -O3 -g -release -of 'sambamba@exe/main.d.o' -c ../main.d ../sambamba/utils/common/readstorage.d(22): Deprecation: module std.c.stdlib is deprecated - Import core.stdc.stdlib or core.sys.posix.stdlib instead ../sambamba/utils/common/readstorage.d(23): Deprecation: module std.c.string is deprecated - Import core.stdc.string instead ../sambamba/sort.d(45): Deprecation: module std.c.stdlib is deprecated - Import core.stdc.stdlib or core.sys.posix.stdlib instead ../sambamba/sort.d(46): Deprecation: module std.c.string is deprecated - Import core.stdc.string instead ../sambamba/markdup.d(37): Deprecation: module std.c.stdlib is deprecated - Import core.stdc.stdlib or core.sys.posix.stdlib instead ../sambamba/depth.d(1154): Deprecation: Implicit string concatenation is deprecated, use "mapping_quality > 0 and " ~ "not duplicate and " instead ../sambamba/depth.d(1155): Deprecation: Implicit string concatenation is deprecated, use "not duplicate and " ~ "not failed_quality_control" instead [2/74] ldc2 -Isambamba@exe -I. -I.. -I/usr/include/d/ -I/usr/include/htslib -enable-color -O3 -g -release -of 'sambamba@exe/sambamba_fixbins.d.o' -c ../sambamba/fixbins.d [3/74] ldc2 -Isambamba@exe -I. -I.. -I/usr/include/d/ -I/usr/include/htslib -enable-color -O3 -g -release -of 'sambamba@exe/sambamba_depth.d.o' -c ../sambamba/depth.d FAILED: sambamba@exe/sambamba_depth.d.o ldc2 -Isambamba@exe -I. -I.. -I/usr/include/d/ -I/usr/include/htslib -enable-color -O3 -g -release -of 'sambamba@exe/sambamba_depth.d.o' -c ../sambamba/depth.d ../sambamba/depth.d(1154): Deprecation: Implicit string concatenation is deprecated, use "mapping_quality > 0 and " ~ "not duplicate and " instead ../sambamba/depth.d(1155): Deprecation: Implicit string concatenation is deprecated, use "not duplicate and " ~ "not failed_quality_control" instead ldc2: /build/ldc-1.4.0/ir/irvar.cpp:44: IrGlobal* getIrGlobal(VarDeclaration*, bool): Assertion `decl->ir->irGlobal != NULL' failed. /usr/lib/x86_64-linux-gnu/libLLVM-5.0.so.1(_ZN4llvm3sys15PrintStackTraceERNS_11raw_ostreamE+0x1a)[0x7f4948132cea] /usr/lib/x86_64-linux-gnu/libLLVM-5.0.so.1(_ZN4llvm3sys17RunSignalHandlersEv+0x56)[0x7f4948130fd6] /usr/lib/x86_64-linux-gnu/libLLVM-5.0.so.1(+0x86e0f3)[0x7f49481310f3] /lib/x86_64-linux-gnu/libpthread.so.0(+0x110c0)[0x7f49472ab0c0] /lib/x86_64-linux-gnu/libc.so.6(gsignal+0xcf)[0x7f494647bfff] /lib/x86_64-linux-gnu/libc.so.6(abort+0x16a)[0x7f494647d42a] /lib/x86_64-linux-gnu/libc.so.6(+0x2be67)[0x7f4946474e67] /lib/x86_64-linux-gnu/libc.so.6(+0x2bf12)[0x7f4946474f12] ----- Perhaps this is not a problem with this package, but I think it is a problem of Dlang. Please forward if necessary. https://github.com/ldc-developers/ldc/issues/2357 Best regards, Nobuhiro -- Nobuhiro Iwamatsu iwamatsu at {nigauri.org / debian.org} GPG ID: 40AD1FA6
