Your message dated Wed, 30 Aug 2017 12:52:26 +0000 with message-id <e1dn2tq-0009y2...@fasolo.debian.org> and subject line Bug#862380: fixed in khmer 2.1.1+dfsg-1 has caused the Debian Bug report #862380, regarding khmer: FTBFS with Python 3.6 to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 862380: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=862380 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: khmer Version: 2.0+dfsg-10 Severity: normal Tags: patch Dear Maintainer, I've applied this patch to get the build working now that Python 3.6 is a supported version in Ubuntu. I admit I don't entirely understand why it is necessary! Maybe you do? :) Cheers, mwh -- System Information: Debian Release: stretch/sid APT prefers xenial-updates APT policy: (500, 'xenial-updates'), (500, 'xenial-security'), (500, 'xenial'), (400, 'xenial-proposed'), (100, 'xenial-backports') Architecture: amd64 (x86_64) Foreign Architectures: i386 Kernel: Linux 4.4.0-75-generic (SMP w/4 CPU cores) Locale: LANG=en_NZ.UTF-8, LC_CTYPE=en_NZ.UTF-8 (charmap=UTF-8) Shell: /bin/sh linked to /bin/dash Init: systemd (via /run/systemd/system)diff -Nru khmer-2.0+dfsg/debian/changelog khmer-2.0+dfsg/debian/changelog --- khmer-2.0+dfsg/debian/changelog 2017-04-07 08:02:24.000000000 +1200 +++ khmer-2.0+dfsg/debian/changelog 2017-05-12 13:34:33.000000000 +1200 @@ -1,3 +1,9 @@ +khmer (2.0+dfsg-10ubuntu1) artful; urgency=medium + + * Fix build with Python 3.6. + + -- Michael Hudson-Doyle <michael.hud...@ubuntu.com> Fri, 12 May 2017 13:15:00 +1200 + khmer (2.0+dfsg-10) unstable; urgency=medium * Team upload. diff -Nru khmer-2.0+dfsg/debian/control khmer-2.0+dfsg/debian/control --- khmer-2.0+dfsg/debian/control 2017-04-07 08:01:23.000000000 +1200 +++ khmer-2.0+dfsg/debian/control 2017-05-12 13:15:39.000000000 +1200 @@ -1,5 +1,6 @@ Source: khmer -Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> +Maintainer: Ubuntu Developers <ubuntu-devel-disc...@lists.ubuntu.com> +XSBC-Original-Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Uploaders: Michael R. Crusoe <michael.cru...@gmail.com>, Kevin Murray <s...@kdmurray.id.au> Section: science diff -Nru khmer-2.0+dfsg/debian/rules khmer-2.0+dfsg/debian/rules --- khmer-2.0+dfsg/debian/rules 2017-04-07 07:57:50.000000000 +1200 +++ khmer-2.0+dfsg/debian/rules 2017-05-12 13:31:58.000000000 +1200 @@ -26,7 +26,7 @@ dh_auto_install PYBUILD_SYSTEM=custom \ PYBUILD_TEST_ARGS="cd {dir}; export PATH={destdir}/usr/lib/khmer/bin:$$PATH ; \ - cd {build_dir}; {interpreter} -m nose --attr \ + cd {build_dir}; export PYTHONPATH=$$(pwd); {interpreter} -m nose --attr \ '!known_failing,!jenkins,!huge'" dh_auto_test
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--- Begin Message ---Source: khmer Source-Version: 2.1.1+dfsg-1 We believe that the bug you reported is fixed in the latest version of khmer, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 862...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Michael R. Crusoe <michael.cru...@gmail.com> (supplier of updated khmer package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 1.8 Date: Tue, 29 Aug 2017 23:30:09 -0700 Source: khmer Binary: khmer-common khmer liboxli1 liboxli-dev Architecture: source Version: 2.1.1+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Michael R. Crusoe <michael.cru...@gmail.com> Description: khmer - in-memory DNA sequence kmer counting, filtering & graph traversal khmer-common - common files for the khmer project tools liboxli-dev - in-memory DNA sequence analysis dev library liboxli1 - in-memory DNA sequence analysis library from the khmer project Closes: 862380 Changes: khmer (2.1.1+dfsg-1) unstable; urgency=medium . [ Andreas Tille ] * Remove empty field . [ Michael R. Crusoe ] * New upstream version 2.1.1 * Incorporate patch from Ubuntu, thank you Michael Hudson-Doyle. Closes: #862380 Checksums-Sha1: 1f78a0a5d00d51c181c99b8f6ce47d53123b9752 2850 khmer_2.1.1+dfsg-1.dsc b27050b87e9e0458d464a84a0ac0ab89faed2c6d 17961464 khmer_2.1.1+dfsg.orig.tar.gz bb7b1a6288f485573005e0ff2968628580cda29a 12916 khmer_2.1.1+dfsg-1.debian.tar.xz 24551815d1aa1f595c9ed7b39934ae9c369dceb2 8317 khmer_2.1.1+dfsg-1_source.buildinfo Checksums-Sha256: 27802169b3aa25ec8d10eb155fa9e3bf7adfe80fc83f6aa9229f280ccfece4e8 2850 khmer_2.1.1+dfsg-1.dsc 45a5ae1660cab8ddfca13946f3e6afa7a01da344beb0a012ddf9ccbabfe36de3 17961464 khmer_2.1.1+dfsg.orig.tar.gz 9cbbae989559325811cd957ab75ea654b787337affdaf8a82d3aebb9824029a1 12916 khmer_2.1.1+dfsg-1.debian.tar.xz 1af4adcf1def28103c3b0acc3a3ea312d55bfab95ce8100ff7131cf7e64bdff8 8317 khmer_2.1.1+dfsg-1_source.buildinfo Files: 9f8ebc0b704722aee77032773d041983 2850 science optional khmer_2.1.1+dfsg-1.dsc 8471c31d9ad31ce806e70367458531c5 17961464 science optional khmer_2.1.1+dfsg.orig.tar.gz 5ddecd8f7fbd7164a3d45d8c50ff761a 12916 science optional khmer_2.1.1+dfsg-1.debian.tar.xz b071a402699994abdabc54e98c999237 8317 science optional khmer_2.1.1+dfsg-1_source.buildinfo -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAlmmrEkACgkQPCZ2P2xn 5uKQOA/9Ep/UC4BJrYfKO1jR95bF+h5cO+1P1SHYv3M+krQfqWpAJZIGZOoU9NBi uLJI3h43llCOZQmHYtTt8Ryp0lomxJKDL3m6f+GyDG9EXC5XVQ3zls9qRcT8U53b gMQncABpHZJPhm+zzOtgfD8gqWNiFBnAqAZXwDcmtY9S/UF2Ef9Zcg6LoJwnHS5i O9guZF2QUtkBuPHzx5D5q6CpybqlHq3VFq7EVp/JieRPEDHb8R4JjsliL+r2pcZf 6kJpC4MzNnMwLMqqi+Yuw7lg8DXdk7CEZWj/0R1/m5WejXxTyfbqV0WqbhCZDd2D RoYp+RStFXRNslSYQc6MEiHWFUewAaimfhUrdGIxLgMw38DPIR88zgT2hRn9aLo+ jWR8hVl7XeB7Oqs/C2HHIyJONtXB8aSxoslzUbag5C85XjU+56urjyhUkAg8xpDL J78jczLnQgRwMXibo3K6VjBYYcIE4evABpdwe9QElGyb2OKkAezP5C77wXntAW6u B3VA5oAvl34hugzlrw+D9o3Ysgxn7ppCQEuLcJdDezQEMOgN8bfmvGowV4+gcuz6 vNC/mlMUEcxRCOhq0Vg9gack0jtUundXKSY0Ri0Lk5d2IKIUM8pQu4dBDfC9I6Yx ITA9VmB/Wk6BofvrUTsBuzJGqoNmGIaKAhKaUOjM4kRQyKm2138= =c7D4 -----END PGP SIGNATURE-----
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