Hi,
when trying to build sga it results in an error:
...
g++ -DHAVE_CONFIG_H -I. -I.. -I../Bigraph -I../Thirdparty -Wdate-time
-D_FORTIFY_SOURCE=2 -fopenmp -I/usr//include -I/usr//include/bamtools -Wall
-Wextra -Wno-unknown-pragmas -std=c++98 -O3 -c -o libutil_a-VariantIndex.o
`test -f 'VariantIndex.cpp' || echo './'`VariantIndex.cpp
VariantIndex.cpp: In member function 'VariantRecordVector
VariantIndex::getNearVariants(const string&, int, int) const':
VariantIndex.cpp:89:46: error: call of overloaded 'abs(long unsigned int)' is
ambiguous
if(abs(record.position - position) < distance)
^
In file included from /usr/include/c++/7/cstdlib:75:0,
from /usr/include/c++/7/bits/stl_algo.h:59,
from /usr/include/c++/7/algorithm:62,
from VariantIndex.cpp:11:
/usr/include/stdlib.h:735:12: note: candidate: int abs(int)
extern int abs (int __x) __THROW __attribute__ ((__const__)) __wur;
^~~
In file included from /usr/include/c++/7/cstdlib:77:0,
from /usr/include/c++/7/bits/stl_algo.h:59,
from /usr/include/c++/7/algorithm:62,
from VariantIndex.cpp:11:
/usr/include/c++/7/bits/std_abs.h:56:3: note: candidate: long int std::abs(long
int)
abs(long __i) { return __builtin_labs(__i); }
^~~
...
I have no idea in how far abs() is overloaded and how to fix this.
Kind regards
Andreas.
--
http://fam-tille.de
