Your message dated Tue, 15 Aug 2017 10:04:02 +0000 with message-id <e1dhyhe-0008rw...@fasolo.debian.org> and subject line Bug#870362: fixed in ariba 2.10.1+ds-1 has caused the Debian Bug report #870362, regarding ariba FTBFS with bowtie2 2.3.2-2 to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 870362: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=870362 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: ariba Version: 2.10.0+ds-1 Severity: serious https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/ariba.html ... ====================================================================== FAIL: Test run_bowtie2 unsorted ---------------------------------------------------------------------- Traceback (most recent call last): File "/build/1st/ariba-2.10.0+ds/ariba/tests/mapping_test.py", line 62, in test_run_bowtie2 self.assertListEqual(expected, got) AssertionError: Lists differ: [('1', 99, 'ref', 0, [(4, 5), (0, 20)], 'AGCCCTC[857 chars]AT')] != [('1', 153, 'ref', 30, [(0, 25)], 'AGGATACAGATCT[795 chars]AT')] First differing element 0: ('1', 99, 'ref', 0, [(4, 5), (0, 20)], 'AGCCCTCCACAGGATGGTGGTATAC') ('1', 153, 'ref', 30, [(0, 25)], 'AGGATACAGATCTTGTGGGAAAGGT') - [('1', 99, 'ref', 0, [(4, 5), (0, 20)], 'AGCCCTCCACAGGATGGTGGTATAC'), - ('1', 147, 'ref', 30, [(0, 25)], 'AGGATACAGATCTTGTGGGAAAGGT'), ? ^ ^^ + [('1', 153, 'ref', 30, [(0, 25)], 'AGGATACAGATCTTGTGGGAAAGGT'), ? ^ ^^ + ('1', 101, None, 30, [], 'AGCCCTCCACAGGATGGTGGTATAC'), - ('2', 99, 'ref', 124, [(0, 25)], 'TAATGTTCTTAGGGCTTACCATAGA'), ? ^^ + ('2', 73, 'ref', 124, [(0, 25)], 'TAATGTTCTTAGGGCTTACCATAGA'), ? ^^ - ('2', 147, 'ref', 170, [(0, 20), (4, 5)], 'TCCACCTTAGCTAAGCGCAGACTCG'), + ('2', 133, None, 124, [], 'CGAGTCTGCGCTTAGCTAAGGTGGA'), ('3', 73, 'ref', 86, [(0, 25)], 'TCGGGTCTGTACAAGGACGGATGGT'), ('3', 133, None, 86, [], 'CGTACTGACTGACTGACGTACTGCA'), ('4', 99, 'ref', 55, [(0, 25)], 'CCGCCGGGAAGTCCTTCTGTCGTGC'), ('4', 147, 'ref', 136, [(0, 25)], 'GGCTTACCATAGAGGTACACTAAAA'), - ('5', 99, 'ref', 0, [(4, 2), (0, 23)], 'CCTCCACAGGATGGTGGTATACCTG'), ? ^^ ^^ -- ^ --------------- + ('5', 77, None, -1, [], 'CCTCCACAGGATGGTGGTATACCTG'), ? ^^ ^^^ ^^ - ('5', 147, 'ref', 166, [(0, 24), (4, 1)], 'TTCATCCACCTTAGCTAAGCGCAGA'), + ('5', 141, None, -1, [], 'TCTGCGCTTAGCTAAGGTGGATGAA'), ('6', 77, None, -1, [], 'CAGTTGCATGACGTCATGCAGTCAT'), ('6', 141, None, -1, [], 'AATGAGTATGATGAGTAATGGTATG'), ('7', 99, 'ref', 56, [(4, 1), (0, 23), (4, 1)], 'ACGCCGGGAAGTCCTTCTGTCGTGT'), ('7', 147, 'ref', 136, [(0, 24), (4, 1)], 'GGCTTACCATAGAGGTACACTAAAT')] ====================================================================== FAIL: Test run_bowtie2 sorted ---------------------------------------------------------------------- Traceback (most recent call last): File "/build/1st/ariba-2.10.0+ds/ariba/tests/mapping_test.py", line 105, in test_run_bowtie2_and_sort self.assertListEqual(expected, got) AssertionError: Lists differ: [('1', 99, 'ref', 0, [(4, 5), (0, 20)], 'AGCCCTC[857 chars]TG')] != [('1', 101, None, 30, [], 'AGCCCTCCACAGGATGGTGGT[795 chars]TG')] First differing element 0: ('1', 99, 'ref', 0, [(4, 5), (0, 20)], 'AGCCCTCCACAGGATGGTGGTATAC') ('1', 101, None, 30, [], 'AGCCCTCCACAGGATGGTGGTATAC') Diff is 1434 characters long. Set self.maxDiff to None to see it. ---------------------------------------------------------------------- Ran 335 tests in 173.301s FAILED (failures=2) debian/rules:23: recipe for target 'override_dh_auto_test' failed make[1]: *** [override_dh_auto_test] Error 1
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--- Begin Message ---Source: ariba Source-Version: 2.10.1+ds-1 We believe that the bug you reported is fixed in the latest version of ariba, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 870...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Sascha Steinbiss <sa...@debian.org> (supplier of updated ariba package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Tue, 15 Aug 2017 10:37:13 +0200 Source: ariba Binary: ariba Architecture: source Version: 2.10.1+ds-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Sascha Steinbiss <sa...@debian.org> Description: ariba - Antibiotic Resistance Identification By Assembly Closes: 870362 Changes: ariba (2.10.1+ds-1) unstable; urgency=medium . * New upstream release. Closes: #870362 Checksums-Sha1: a09ceb054fadee1274d2850e7b2549161744d4e0 1938 ariba_2.10.1+ds-1.dsc de23806e4c66893b8292cd81315516492132d373 343968 ariba_2.10.1+ds.orig.tar.xz 6466db00995b65ee6b9415abcbcdd43638ee75fc 6596 ariba_2.10.1+ds-1.debian.tar.xz 02f7dbac241e676444cdd5140ae5e5771cfb88ca 9036 ariba_2.10.1+ds-1_source.buildinfo Checksums-Sha256: c97c324cd36dcad23ba1d3ae4f94a04988083a349808842cff0e295df534faa8 1938 ariba_2.10.1+ds-1.dsc c06c19dc51bc5d757d1bb9b2a62c7c4cde32d4bb9a669169a07211c58bc6528e 343968 ariba_2.10.1+ds.orig.tar.xz 2abe3b2146b5ab17ab83a6566000c0d038ca13ea27c2ce7bde59876d9dd9f6d9 6596 ariba_2.10.1+ds-1.debian.tar.xz 9981fa3612e8f0d34e9449c826e026b741c667cda85b50ba6d02e9f4d3de7e68 9036 ariba_2.10.1+ds-1_source.buildinfo Files: 0fd504406692ce6e128f9842e463a759 1938 science optional ariba_2.10.1+ds-1.dsc 9ea10f4faea2baab0f1784b1993b0219 343968 science optional ariba_2.10.1+ds.orig.tar.xz 25dc54a9624b1524047bbb49c1f69c1e 6596 science optional ariba_2.10.1+ds-1.debian.tar.xz d129a10f350f8bece5d475d4fc45464e 9036 science optional ariba_2.10.1+ds-1_source.buildinfo -----BEGIN PGP SIGNATURE----- iQEzBAEBCAAdFiEEhFH5F4Fy5+Lcc/eVUfhKj+zKfgkFAlmSxEEACgkQUfhKj+zK fglnSQgAuSlPDt2K4ALRM2rpr9W0Awfp54DKhTLVY+cjVbX1VP0PIyzczMLjQ0A1 89Q2WgxxY60iQ/oaeQn8bYOk0ftZ//fQw1Q8ibPMLstkeww7s0HOqLVBGFSuuN0Z iy4mrl2aXYOBG01TGPmRkOouxvqF0vLodGgeuSS8BAyl+qSazo6MpsRIrwuhlcB/ iy29UWmEr6tJFB4S0rKQNvLw3m2NS7miw17lVLzrBGWl7scOQQNOXdudlk4rXat+ xEoNcZ4VMzC+1kIkuE646xB0MtCNTjnNTbX0wvkGdeFHD8bmETLWKg41mwrzOmsN bJFOb3WEU+OV2f+EnWe7RWRTshhMsw== =BMGT -----END PGP SIGNATURE-----
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