Your message dated Tue, 15 Aug 2017 10:04:02 +0000
with message-id <e1dhyhe-0008rw...@fasolo.debian.org>
and subject line Bug#870362: fixed in ariba 2.10.1+ds-1
has caused the Debian Bug report #870362,
regarding ariba FTBFS with bowtie2 2.3.2-2
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

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-- 
870362: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=870362
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: ariba
Version: 2.10.0+ds-1
Severity: serious

https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/ariba.html

...
======================================================================
FAIL: Test run_bowtie2 unsorted
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/build/1st/ariba-2.10.0+ds/ariba/tests/mapping_test.py", line 62, in 
test_run_bowtie2
    self.assertListEqual(expected, got)
AssertionError: Lists differ: [('1', 99, 'ref', 0, [(4, 5), (0, 20)], 
'AGCCCTC[857 chars]AT')] != [('1', 153, 'ref', 30, [(0, 25)], 
'AGGATACAGATCT[795 chars]AT')]

First differing element 0:
('1', 99, 'ref', 0, [(4, 5), (0, 20)], 'AGCCCTCCACAGGATGGTGGTATAC')
('1', 153, 'ref', 30, [(0, 25)], 'AGGATACAGATCTTGTGGGAAAGGT')

- [('1', 99, 'ref', 0, [(4, 5), (0, 20)], 'AGCCCTCCACAGGATGGTGGTATAC'),
-  ('1', 147, 'ref', 30, [(0, 25)], 'AGGATACAGATCTTGTGGGAAAGGT'),
? ^       ^^

+ [('1', 153, 'ref', 30, [(0, 25)], 'AGGATACAGATCTTGTGGGAAAGGT'),
? ^       ^^

+  ('1', 101, None, 30, [], 'AGCCCTCCACAGGATGGTGGTATAC'),
-  ('2', 99, 'ref', 124, [(0, 25)], 'TAATGTTCTTAGGGCTTACCATAGA'),
?        ^^

+  ('2', 73, 'ref', 124, [(0, 25)], 'TAATGTTCTTAGGGCTTACCATAGA'),
?        ^^

-  ('2', 147, 'ref', 170, [(0, 20), (4, 5)], 'TCCACCTTAGCTAAGCGCAGACTCG'),
+  ('2', 133, None, 124, [], 'CGAGTCTGCGCTTAGCTAAGGTGGA'),
   ('3', 73, 'ref', 86, [(0, 25)], 'TCGGGTCTGTACAAGGACGGATGGT'),
   ('3', 133, None, 86, [], 'CGTACTGACTGACTGACGTACTGCA'),
   ('4', 99, 'ref', 55, [(0, 25)], 'CCGCCGGGAAGTCCTTCTGTCGTGC'),
   ('4', 147, 'ref', 136, [(0, 25)], 'GGCTTACCATAGAGGTACACTAAAA'),
-  ('5', 99, 'ref', 0, [(4, 2), (0, 23)], 'CCTCCACAGGATGGTGGTATACCTG'),
?        ^^  ^^ --  ^   ---------------

+  ('5', 77, None, -1, [], 'CCTCCACAGGATGGTGGTATACCTG'),
?        ^^  ^^^   ^^

-  ('5', 147, 'ref', 166, [(0, 24), (4, 1)], 'TTCATCCACCTTAGCTAAGCGCAGA'),
+  ('5', 141, None, -1, [], 'TCTGCGCTTAGCTAAGGTGGATGAA'),
   ('6', 77, None, -1, [], 'CAGTTGCATGACGTCATGCAGTCAT'),
   ('6', 141, None, -1, [], 'AATGAGTATGATGAGTAATGGTATG'),
   ('7', 99, 'ref', 56, [(4, 1), (0, 23), (4, 1)], 'ACGCCGGGAAGTCCTTCTGTCGTGT'),
   ('7', 147, 'ref', 136, [(0, 24), (4, 1)], 'GGCTTACCATAGAGGTACACTAAAT')]

======================================================================
FAIL: Test run_bowtie2 sorted
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/build/1st/ariba-2.10.0+ds/ariba/tests/mapping_test.py", line 105, in 
test_run_bowtie2_and_sort
    self.assertListEqual(expected, got)
AssertionError: Lists differ: [('1', 99, 'ref', 0, [(4, 5), (0, 20)], 
'AGCCCTC[857 chars]TG')] != [('1', 101, None, 30, [], 
'AGCCCTCCACAGGATGGTGGT[795 chars]TG')]

First differing element 0:
('1', 99, 'ref', 0, [(4, 5), (0, 20)], 'AGCCCTCCACAGGATGGTGGTATAC')
('1', 101, None, 30, [], 'AGCCCTCCACAGGATGGTGGTATAC')

Diff is 1434 characters long. Set self.maxDiff to None to see it.

----------------------------------------------------------------------
Ran 335 tests in 173.301s

FAILED (failures=2)
debian/rules:23: recipe for target 'override_dh_auto_test' failed
make[1]: *** [override_dh_auto_test] Error 1

--- End Message ---
--- Begin Message ---
Source: ariba
Source-Version: 2.10.1+ds-1

We believe that the bug you reported is fixed in the latest version of
ariba, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 870...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Sascha Steinbiss <sa...@debian.org> (supplier of updated ariba package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256

Format: 1.8
Date: Tue, 15 Aug 2017 10:37:13 +0200
Source: ariba
Binary: ariba
Architecture: source
Version: 2.10.1+ds-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Sascha Steinbiss <sa...@debian.org>
Description:
 ariba      - Antibiotic Resistance Identification By Assembly
Closes: 870362
Changes:
 ariba (2.10.1+ds-1) unstable; urgency=medium
 .
   * New upstream release.
     Closes: #870362
Checksums-Sha1:
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 de23806e4c66893b8292cd81315516492132d373 343968 ariba_2.10.1+ds.orig.tar.xz
 6466db00995b65ee6b9415abcbcdd43638ee75fc 6596 ariba_2.10.1+ds-1.debian.tar.xz
 02f7dbac241e676444cdd5140ae5e5771cfb88ca 9036 
ariba_2.10.1+ds-1_source.buildinfo
Checksums-Sha256:
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ariba_2.10.1+ds-1.dsc
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ariba_2.10.1+ds.orig.tar.xz
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ariba_2.10.1+ds-1.debian.tar.xz
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ariba_2.10.1+ds-1_source.buildinfo
Files:
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 9ea10f4faea2baab0f1784b1993b0219 343968 science optional 
ariba_2.10.1+ds.orig.tar.xz
 25dc54a9624b1524047bbb49c1f69c1e 6596 science optional 
ariba_2.10.1+ds-1.debian.tar.xz
 d129a10f350f8bece5d475d4fc45464e 9036 science optional 
ariba_2.10.1+ds-1_source.buildinfo

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--- End Message ---

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