Your message dated Fri, 06 Jan 2017 03:07:48 +0000 with message-id <[email protected]> and subject line Bug#850336: fixed in rmpi 0.6-6-2 has caused the Debian Bug report #850336, regarding rmpi: FTBFS (Cannot find mpi.h header file) to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact [email protected] immediately.) -- 850336: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=850336 Debian Bug Tracking System Contact [email protected] with problems
--- Begin Message ---Package: src:rmpi Version: 0.6-6-1 Severity: serious Dear maintainer: I tried to build this package in stretch with "dpkg-buildpackage -B" but it failed: -------------------------------------------------------------------------------- [...] debian/rules build-arch CDBS WARNING: simple-patchsys.mk is deprecated since 0.4.85 - please use source format 3.0 (quilt) instead test -x debian/rules mkdir -p "." /usr/bin/make -f debian/rules reverse-config make[1]: Entering directory '/<<PKGBUILDDIR>>' CDBS WARNING: simple-patchsys.mk is deprecated since 0.4.85 - please use source format 3.0 (quilt) instead make[1]: 'reverse-config' is up to date. make[1]: Leaving directory '/<<PKGBUILDDIR>>' if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi patches: if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi if [ "debian/stamp-patched" != "reverse-patches" ] ; then \ [... snipped ...] if test -f /usr/bin/xvfb-run; then \ xvfb-run -a \ R CMD INSTALL -l /<<PKGBUILDDIR>>/debian/r-cran-rmpi/usr/lib/R/site-library --clean \ "--no-test-load" . \ "--built-timestamp=\"Sat, 25 Jun 2016 07:43:11 -0500\"" \ ; \ else \ R CMD INSTALL -l /<<PKGBUILDDIR>>/debian/r-cran-rmpi/usr/lib/R/site-library \ --clean "--no-test-load" . \ "--built-timestamp=\"Sat, 25 Jun 2016 07:43:11 -0500\"" \ ; \ fi * installing *source* package 'Rmpi' ... ** package 'Rmpi' successfully unpacked and MD5 sums checked checking for gcc... gcc -std=gnu99 checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc -std=gnu99 accepts -g... yes checking for gcc -std=gnu99 option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -std=gnu99 -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking mpi.h usability... no checking mpi.h presence... no checking for mpi.h... no configure: error: "Cannot find mpi.h header file" ERROR: configuration failed for package 'Rmpi' * removing '/<<PKGBUILDDIR>>/debian/r-cran-rmpi/usr/lib/R/site-library/Rmpi' /usr/share/R/debian/r-cran.mk:98: recipe for target 'R_any_arch' failed make: *** [R_any_arch] Error 1 dpkg-buildpackage: error: fakeroot debian/rules binary-arch gave error exit status 2 -------------------------------------------------------------------------------- This is just how the build ends, not necessarily the relevant part. I've put several build logs here: https://people.debian.org/~sanvila/build-logs/rmpi/ If this is really a bug in one of the build-depends, please use reassign and affects, so that this is still visible in the page for this package. The bug should be reproducible with sbuild on a single CPU virtual machine. Thanks.
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--- Begin Message ---Source: rmpi Source-Version: 0.6-6-2 We believe that the bug you reported is fixed in the latest version of rmpi, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to [email protected], and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Dirk Eddelbuettel <[email protected]> (supplier of updated rmpi package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing [email protected]) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1 Format: 1.8 Date: Thu, 05 Jan 2017 19:59:00 -0600 Source: rmpi Binary: r-cran-rmpi Architecture: source amd64 Version: 0.6-6-2 Distribution: unstable Urgency: medium Maintainer: Dirk Eddelbuettel <[email protected]> Changed-By: Dirk Eddelbuettel <[email protected]> Description: r-cran-rmpi - GNU R package interfacing MPI libraries for distributed computing Closes: 850336 Changes: rmpi (0.6-6-2) unstable; urgency=medium . * configure.ac: Add a new location for mpi.h to account for updated layout in Open MPI 2.0; will send upstream too (Closes: #850336) * configure: Updated accordingly Checksums-Sha1: 8fadd0c6c22b245796d2f18c9e39feccbd5f2d95 1658 rmpi_0.6-6-2.dsc 802c9403f6ad0ad601423bf5b40f74c316b5e504 4445 rmpi_0.6-6-2.diff.gz ab7400d07bf1daf545918f75653ef42e16fca7e8 33896 r-cran-rmpi-dbgsym_0.6-6-2_amd64.deb 1a19840238510d900f58ecef3668aec9ae89ba79 194546 r-cran-rmpi_0.6-6-2_amd64.deb 4f565706315dc888814af0b53d8fe808bece17e1 8326 rmpi_0.6-6-2_amd64.buildinfo Checksums-Sha256: 75cfe1d33b55513ab9b3d0b63404a792c2f96d117bd6c51665d2235d644f88cf 1658 rmpi_0.6-6-2.dsc 422352a326e7ff62fb5c31f7fdb473fe5cecd2f4a7231678034613273bc69edc 4445 rmpi_0.6-6-2.diff.gz 74f13c13794aeee6951fe256c98dd4da989244cd2d287ebda25a07bbf20cab72 33896 r-cran-rmpi-dbgsym_0.6-6-2_amd64.deb 4c5a41632d567811ec3988c8729704c6ebcaf67f1cd2f9620b77266fb159708b 194546 r-cran-rmpi_0.6-6-2_amd64.deb 1626488ba3a87541acb2ac86ab61721f82ca3808d59f775d7190649929724f57 8326 rmpi_0.6-6-2_amd64.buildinfo Files: 5685fbb88be19e60920e81afa66e6b8a 1658 gnu-r optional rmpi_0.6-6-2.dsc f1dfe16f5bb594aba1cdcd04be472bc4 4445 gnu-r optional rmpi_0.6-6-2.diff.gz 3ac0528b198b74c37b3e4ffa02a58bd7 33896 debug extra r-cran-rmpi-dbgsym_0.6-6-2_amd64.deb 808b40d7139c6afaadb2e6312197ca18 194546 gnu-r optional r-cran-rmpi_0.6-6-2_amd64.deb 4cd8aeea151aac49bb3a1d730f68b151 8326 gnu-r optional rmpi_0.6-6-2_amd64.buildinfo -----BEGIN PGP SIGNATURE----- Version: GnuPG v1 iQIVAwUBWG76JKFIn+KrmaIaAQIFMxAAi1aB1erEG/eKQbvWyq5hQY/EO2P40Vfr +W3BiWk6CYxAXHTV3FX/HxRGclR7pXcsSHKhgUsSBSpN2hZS0RrFDQwb0h+bLMhh Sexwn4WJht6p+ARD7sG7efMXsZzRWg2nvfgPY4lRAaKl7MVWKPw4G5Bpy0psWq+q Po+nhnZOpPJOXAAKYYIELlXZqYUOBX/uw+6IHM9rGLCEAAJWs+c2rVzE7kjGFc0d 3B5GUMBZu4mnDTX4++D1xIdU9GKy8jdMn1TRQutE9Z1xzBkwMc0FzesCKCncPpSk fd4y3NpLKrIBwVMphWIjYV7XgDqOWBADvfsOrvfNHFldlYtNVaeGkxcTgd2T5IFE TYnm7nB/nhA3A+JzmDn7JwOs1Ft4Oz7khWkLhnSk5/1d/1nsJ2Sm3Bt/0XcSVzv5 psjNnS9VJlYt3To7UdwDpmjSvi7O3TVtaNXhr1UxUk8Zsm05QPUKp1Cwp8tv5owI z0K3/JFxzNTtKxb+cMfPdrSoczkwfpsMeIwsJKJlR1dreFs5njYNPQgUXl6e2cdt ZjMczgZ0A5LLfdcEGbIDkOA9HTryJYeWBBuEA30m3qI4+rjvfoxB9Yo7zpjyahiU nLIVce0wHo0ZPBvo85CjFhL0KP4opBHO911ujWHDkDFgDrmCEWa9GbJJuqHpH7+L L6WjjDDSOAE= =/E2a -----END PGP SIGNATURE-----
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