Your message dated Tue, 03 Jan 2017 21:03:59 +0000
with message-id <[email protected]>
and subject line Bug#850029: fixed in bioperl-run 1.7.1-2
has caused the Debian Bug report #850029,
regarding libbio-perl-run-perl: fails to upgrade from 'jessie' - trying to
overwrite /usr/share/man/man3/Bio::Tools::Run::StandAloneBlast.3pm.gz
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
850029: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=850029
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: libbio-perl-run-perl
Version: 1.7.1-1
Severity: serious
User: [email protected]
Usertags: piuparts
Hi,
during a test with piuparts I noticed your package fails to upgrade from
'jessie'.
It installed fine in 'jessie', then the upgrade to 'stretch' fails
because it tries to overwrite other packages files without declaring a
Breaks+Replaces relation.
See policy 7.6 at
https://www.debian.org/doc/debian-policy/ch-relationships.html#s-replaces
>From the attached log (scroll to the bottom...):
Selecting previously unselected package libbio-perl-run-perl.
Preparing to unpack .../libbio-perl-run-perl_1.7.1-1_all.deb ...
Unpacking libbio-perl-run-perl (1.7.1-1) ...
dpkg: error processing archive
/var/cache/apt/archives/libbio-perl-run-perl_1.7.1-1_all.deb (--unpack):
trying to overwrite
'/usr/share/man/man3/Bio::Tools::Run::StandAloneBlast.3pm.gz', which is also in
package libbio-perl-perl 1.6.924-1
dpkg-deb: error: subprocess paste was killed by signal (Broken pipe)
Errors were encountered while processing:
/var/cache/apt/archives/libbio-perl-run-perl_1.7.1-1_all.deb
cheers,
Andreas
libbio-perl-perl=1.6.924-1_libbio-perl-run-perl=1.7.1-1.log.gz
Description: application/gzip
--- End Message ---
--- Begin Message ---
Source: bioperl-run
Source-Version: 1.7.1-2
We believe that the bug you reported is fixed in the latest version of
bioperl-run, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <[email protected]> (supplier of updated bioperl-run package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Tue, 03 Jan 2017 21:10:54 +0100
Source: bioperl-run
Binary: bioperl-run libbio-perl-run-perl
Architecture: source
Version: 1.7.1-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Andreas Tille <[email protected]>
Description:
bioperl-run - BioPerl wrappers: scripts
libbio-perl-run-perl - BioPerl wrappers: modules
Closes: 850029
Changes:
bioperl-run (1.7.1-2) unstable; urgency=medium
.
* Conflicts: libbio-perl-perl (<< 1.7.1-1)
Closes: #850029
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