Your message dated Wed, 02 Nov 2016 13:49:01 +0000
with message-id <e1c1vux-0004p1...@fasolo.debian.org>
and subject line Bug#842914: fixed in r-bioc-cummerbund 2.16.0-2
has caused the Debian Bug report #842914,
regarding r-bioc-cummerbund: FTBFS (no package called 'foreign')
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
842914: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=842914
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: src:r-bioc-cummerbund
Version: 2.16.0-1
Severity: serious
Dear maintainer:
I tried to build this package in stretch with "dpkg-buildpackage -A"
(which is what the "Arch: all" autobuilder would do to build it)
but it failed:
--------------------------------------------------------------------------------
[...]
debian/rules build-indep
dh build-indep --buildsystem R
dh_testdir -i -O--buildsystem=R
dh_update_autotools_config -i -O--buildsystem=R
dh_auto_configure -i -O--buildsystem=R
dh_auto_build -i -O--buildsystem=R
dh_auto_test -i -O--buildsystem=R
fakeroot debian/rules binary-indep
dh binary-indep --buildsystem R
dh_testroot -i -O--buildsystem=R
dh_prep -i -O--buildsystem=R
dh_installdirs -i -O--buildsystem=R
dh_auto_install -i -O--buildsystem=R
I: R Package: cummeRbund Version: 2.16.0
I: Building using R version 3.3.1.20161024-1
I: R API version: r-api-3
I: Using built-time from d/changelog: Thu, 27 Oct 2016 15:53:32 +0200
mkdir -p
/<<PKGBUILDDIR>>/debian/r-bioc-cummerbund/usr/lib/R/site-library
R CMD INSTALL -l
/<<PKGBUILDDIR>>/debian/r-bioc-cummerbund/usr/lib/R/site-library --clean .
"--built-timestamp='Thu, 27 Oct 2016 15:53:32 +0200'"
* installing *source* package 'cummeRbund' ...
** R
** data
** inst
** preparing package for lazy loading
Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck =
vI[[j]]) :
there is no package called 'foreign'
Error : package 'Gviz' could not be loaded
ERROR: lazy loading failed for package 'cummeRbund'
* removing
'/<<PKGBUILDDIR>>/debian/r-bioc-cummerbund/usr/lib/R/site-library/cummeRbund'
dh_auto_install: R CMD INSTALL -l
/<<PKGBUILDDIR>>/debian/r-bioc-cummerbund/usr/lib/R/site-library --clean .
--built-timestamp='Thu, 27 Oct 2016 15:53:32 +0200' returned exit code 1
debian/rules:4: recipe for target 'binary-indep' failed
make: *** [binary-indep] Error 25
dpkg-buildpackage: error: fakeroot debian/rules binary-indep gave error exit
status 2
--------------------------------------------------------------------------------
Seems like a missing build-depends.
Thanks.
--- End Message ---
--- Begin Message ---
Source: r-bioc-cummerbund
Source-Version: 2.16.0-2
We believe that the bug you reported is fixed in the latest version of
r-bioc-cummerbund, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 842...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <ti...@debian.org> (supplier of updated r-bioc-cummerbund package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Wed, 02 Nov 2016 14:09:24 +0100
Source: r-bioc-cummerbund
Binary: r-bioc-cummerbund
Architecture: source all
Version: 2.16.0-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
r-bioc-cummerbund - tool for analysis of Cufflinks RNA-Seq output
Closes: 842914
Changes:
r-bioc-cummerbund (2.16.0-2) unstable; urgency=medium
.
* Build-Depends: r-cran-foreign, r-cran-nnet
Closes: #842914
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r-bioc-cummerbund_2.16.0-2.debian.tar.xz
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r-bioc-cummerbund_2.16.0-2_all.deb
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Files:
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r-bioc-cummerbund_2.16.0-2.debian.tar.xz
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r-bioc-cummerbund_2.16.0-2_all.deb
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