Your message dated Sun, 02 Oct 2016 17:49:18 +0000
with message-id <e1bqkt4-0002aq...@franck.debian.org>
and subject line Bug#839361: fixed in mpqc3 0.0~git20160216-5
has caused the Debian Bug report #839361,
regarding mpqc3: FTBFS: Libint library is too old: a recent beta of 2.1.0 is
required
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
839361: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=839361
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: mpqc3
Version: 0.0~git20160216-3
Severity: serious
Tags: stretch sid
User: debian...@lists.debian.org
Usertags: qa-ftbfs-20160930 qa-ftbfs
Justification: FTBFS on amd64
Hi,
During a rebuild of all packages in sid, your package failed to build on
amd64.
Relevant part (hopefully):
> make[1]: Entering directory '/<<PKGBUILDDIR>>'
> dh_auto_configure -- -DMPI_C_COMPILER=mpicc
> cmake .. -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_VERBOSE_MAKEFILE=ON
> -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc
> -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DMPI_C_COMPILER=mpicc
> -- The CXX compiler identification is GNU 6.2.0
> -- The C compiler identification is GNU 6.2.0
> -- The Fortran compiler identification is GNU 6.2.0
> -- Check for working CXX compiler: /usr/bin/c++
> -- Check for working CXX compiler: /usr/bin/c++ -- works
> -- Detecting CXX compiler ABI info
> -- Detecting CXX compiler ABI info - done
> -- Detecting CXX compile features
> -- Detecting CXX compile features - done
> -- Check for working C compiler: /usr/bin/cc
> -- Check for working C compiler: /usr/bin/cc -- works
> -- Detecting C compiler ABI info
> -- Detecting C compiler ABI info - done
> -- Detecting C compile features
> -- Detecting C compile features - done
> -- Check for working Fortran compiler: /usr/bin/gfortran
> -- Check for working Fortran compiler: /usr/bin/gfortran -- works
> -- Detecting Fortran compiler ABI info
> -- Detecting Fortran compiler ABI info - done
> -- Checking whether /usr/bin/gfortran supports Fortran 90
> -- Checking whether /usr/bin/gfortran supports Fortran 90 -- yes
> -- cotire 1.5.2 loaded.
> -- Performing Test HAVE_CXX_AUTO
> -- Performing Test HAVE_CXX_AUTO - Success
> -- Performing Test HAVE_STD_ARRAY
> -- Performing Test HAVE_STD_ARRAY - Success
> -- Performing Test HAVE_CXX_RESTRICT
> -- Performing Test HAVE_CXX_RESTRICT - Failed
> -- Performing Test HAVE_CXX___RESTRICT__
> -- Performing Test HAVE_CXX___RESTRICT__ - Success
> -- Looking for pthread.h
> -- Looking for pthread.h - found
> -- Looking for pthread_create
> -- Looking for pthread_create - not found
> -- Looking for pthread_create in pthreads
> -- Looking for pthread_create in pthreads - not found
> -- Looking for pthread_create in pthread
> -- Looking for pthread_create in pthread - found
> -- Found Threads: TRUE
> -- Looking for include file pthread.h
> -- Looking for include file pthread.h - found
> -- Looking for sys/types.h
> -- Looking for sys/types.h - found
> -- Looking for stdint.h
> -- Looking for stdint.h - found
> -- Looking for stddef.h
> -- Looking for stddef.h - found
> -- Check size of int64_t
> -- Check size of int64_t - done
> -- Check size of int32_t
> -- Check size of int32_t - done
> -- Check size of long
> -- Check size of long - done
> -- Check size of int
> -- Check size of int - done
> -- Looking for include file dlfcn.h
> -- Looking for include file dlfcn.h - found
> -- Looking for include file sys/time.h
> -- Looking for include file sys/time.h - found
> -- Looking for include file sys/times.h
> -- Looking for include file sys/times.h - found
> -- Looking for include file sys/resource.h
> -- Looking for include file sys/resource.h - found
> -- Looking for include file unistd.h
> -- Looking for include file unistd.h - found
> -- Looking for include file pwd.h
> -- Looking for include file pwd.h - found
> -- Looking for include file time.h
> -- Looking for include file time.h - found
> -- Looking for include file libunwind.h
> -- Looking for include file libunwind.h - not found
> -- Looking for C++ include cxxabi.h
> -- Looking for C++ include cxxabi.h - found
> -- Looking for include file execinfo.h
> -- Looking for include file execinfo.h - found
> -- Looking for gethostname
> -- Looking for gethostname - found
> -- Looking for getpwuid
> -- Looking for getpwuid - found
> -- Looking for geteuid
> -- Looking for geteuid - found
> -- Looking for getrusage
> -- Looking for getrusage - found
> -- Looking for lstat
> -- Looking for lstat - found
> -- Looking for time
> -- Looking for time - found
> -- Looking for ctime
> -- Looking for ctime - found
> -- Looking for posix_spawn
> -- Looking for posix_spawn - found
> -- Performing Test HAVE_CXA_DEMANGLE
> -- Performing Test HAVE_CXA_DEMANGLE - Success
> -- Looking for abi::__cxa_demangle - found
> -- Looking for backtrace
> -- Looking for backtrace - found
> -- Looking for backtrace_symbols
> -- Looking for backtrace_symbols - found
> -- Detecting Fortran/C Interface
> -- Detecting Fortran/C Interface - Found GLOBAL and MODULE mangling
> -- Verifying Fortran/CXX Compiler Compatibility
> -- Verifying Fortran/CXX Compiler Compatibility - Success
> -- Found PAPI: /usr/lib/x86_64-linux-gnu/libpapi.a
> -- Found MPI_C: /usr/lib/libmpi.so
> -- Found MPI_CXX: /usr/lib/libmpi_cxx.so;/usr/lib/libmpi.so
> -- Found MPI_Fortran:
> /usr/lib/libmpi_usempif08.so;/usr/lib/libmpi_usempi_ignore_tkr.so;/usr/lib/libmpi_mpifh.so;/usr/lib/libmpi.so
>
> -- MPI_LIBRARIES: /usr/lib/libmpi_cxx.so;/usr/lib/libmpi.so
> -- MPI_LINKER_FLAGS:
> -- Performing Test CXX_COMPILER_COMPILES_MPIIO
> -- Performing Test CXX_COMPILER_COMPILES_MPIIO - Success
> -- Looking for Fortran sgemm
> -- Looking for Fortran sgemm - found
> -- A library with BLAS API found.
> -- Looking for Fortran cheev
> -- Looking for Fortran cheev - found
> -- A library with LAPACK API found.
> -- BLAS libraries: /usr/lib/libblas.so
> -- LAPACK libraries: /usr/lib/liblapack.so;/usr/lib/libblas.so
> -- LAPACK linker flags:
> -- Found Eigen: /usr/include/eigen3 (Required is at least version "3.0")
> -- Performing Test EIGEN_COMPILES
> -- Performing Test EIGEN_COMPILES - Success
> -- Performing Test LIBINT_COMPILES
> -- Performing Test LIBINT_COMPILES - Success
> -- Performing Test LIBINT_IS_UP_TO_DATE
> -- Performing Test LIBINT_IS_UP_TO_DATE - Failed
> CMake Error at external/Libint:81 (message):
> Libint library is too old: a recent beta of 2.1.0 is required
> Call Stack (most recent call first):
> external/External:11 (include)
> CMakeLists.txt:301 (include)
>
>
> -- Configuring incomplete, errors occurred!
> See also "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/CMakeFiles/CMakeOutput.log".
> See also "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/CMakeFiles/CMakeError.log".
> "tail -v -n +0 CMakeCache.txt"
> ==> CMakeCache.txt <==
> # This is the CMakeCache file.
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> //No help, variable specified on the command line.
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> //man documentation (DATAROOTDIR/man)
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>
> //modifiable architecture-independent data (com)
> CMAKE_INSTALL_SHAREDSTATEDIR:PATH=com
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> //No help, variable specified on the command line.
> CMAKE_INSTALL_SYSCONFDIR:UNINITIALIZED=/etc
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> CMAKE_LINKER:FILEPATH=/usr/bin/ld
>
> //Path to a program.
> CMAKE_MAKE_PROGRAM:FILEPATH=/usr/bin/make
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> //Flags used by the linker during release minsize builds.
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> //Flags used by the linker during release builds.
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> //Path to a program.
> CMAKE_NM:FILEPATH=/usr/bin/nm
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> //Path to a program.
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> //Path to a program.
> CMAKE_OBJDUMP:FILEPATH=/usr/bin/objdump
>
> //Value Computed by CMake
> CMAKE_PROJECT_NAME:STATIC=MPQC
>
> //Path to a program.
> CMAKE_RANLIB:FILEPATH=/usr/bin/ranlib
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> //MPI CXX libraries to link against
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> -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags
>
> //Cleared
> MPI_C_COMPILER:FILEPATH=/usr/bin/mpicc
>
> //MPI C compilation flags
> MPI_C_COMPILE_FLAGS:STRING=
>
> //MPI C include path
> MPI_C_INCLUDE_PATH:STRING=/usr/lib/openmpi/include/openmpi;/usr/include;/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent;/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include;/usr/lib/openmpi/include
>
> //MPI C libraries to link against
> MPI_C_LIBRARIES:STRING=/usr/lib/libmpi.so
>
> //MPI C linking flags
> MPI_C_LINK_FLAGS:STRING= -Wl,-rpath -Wl,/usr//lib -Wl,-rpath
> -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags
>
> //Extra MPI libraries to link against
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> //Path to a program.
> MPI_Fortran_COMPILER:FILEPATH=/usr/bin/mpif90
>
> //MPI Fortran compilation flags
> MPI_Fortran_COMPILE_FLAGS:STRING=
>
> //MPI Fortran include path
> MPI_Fortran_INCLUDE_PATH:STRING=/usr/lib/openmpi/include;/usr/lib/openmpi/lib
>
> //MPI Fortran libraries to link against
> MPI_Fortran_LIBRARIES:STRING=/usr/lib/libmpi_usempif08.so;/usr/lib/libmpi_usempi_ignore_tkr.so;/usr/lib/libmpi_mpifh.so;/usr/lib/libmpi.so
>
> //MPI Fortran linking flags
> MPI_Fortran_LINK_FLAGS:STRING= -Wl,-rpath -Wl,/usr//lib -Wl,-rpath
> -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags
>
> //MPI library to link against
> MPI_LIBRARY:FILEPATH=/usr/lib/libmpi_cxx.so
>
> //Value Computed by CMake
> MPQC_BINARY_DIR:STATIC=/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu
>
> //MPQC Expert mode: disables automatically downloading or building
> // dependencies
> MPQC_EXPERT:BOOL=OFF
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> PAPI_INCLUDE_DIRS-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: PAPI_LIBRARIES
> PAPI_LIBRARIES-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: SCPCOMMAND
> SCPCOMMAND-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: SITE
> SITE-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: SLURM_SBATCH_COMMAND
> SLURM_SBATCH_COMMAND-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: SLURM_SRUN_COMMAND
> SLURM_SRUN_COMMAND-ADVANCED:INTERNAL=1
> //ADVANCED property for variable: SVNCOMMAND
> SVNCOMMAND-ADVANCED:INTERNAL=1
> //CMAKE_INSTALL_PREFIX during last run
> _GNUInstallDirs_LAST_CMAKE_INSTALL_PREFIX:INTERNAL=/usr
>
> dh_auto_configure: cmake .. -DCMAKE_INSTALL_PREFIX=/usr
> -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_BUILD_TYPE=None
> -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var
> -DMPI_C_COMPILER=mpicc returned exit code 1
> debian/rules:11: recipe for target 'override_dh_auto_configure' failed
> make[1]: *** [override_dh_auto_configure] Error 255
If the failure looks somehow time/timezone related:
Note that this rebuild was performed without the 'tzdata' package
installed in the chroot. tzdata used be (transitively) part of
build-essential, but it no longer is. If this package requires it to
build, it should be added to build-depends. For the release team's
opinion on this, see
https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=836940#185
The full build log is available from:
http://aws-logs.debian.net/2016/09/30/mpqc3_0.0~git20160216-3_unstable.log
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
About the archive rebuild: The rebuild was done on EC2 VM instances from
Amazon Web Services, using a clean, minimal and up-to-date chroot. Every
failed build was retried once to eliminate random failures.
--- End Message ---
--- Begin Message ---
Source: mpqc3
Source-Version: 0.0~git20160216-5
We believe that the bug you reported is fixed in the latest version of
mpqc3, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 839...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Michael Banck <mb...@debian.org> (supplier of updated mpqc3 package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Format: 1.8
Date: Sun, 02 Oct 2016 19:36:10 +0200
Source: mpqc3
Binary: mpqc3 mpqc3-data
Architecture: source
Version: 0.0~git20160216-5
Distribution: unstable
Urgency: medium
Maintainer: Debichem Team <debichem-de...@lists.alioth.debian.org>
Changed-By: Michael Banck <mb...@debian.org>
Description:
mpqc3 - Massively Parallel Quantum Chemistry Program
mpqc3-data - Massively Parallel Quantum Chemistry Program (data files)
Closes: 839361
Changes:
mpqc3 (0.0~git20160216-5) unstable; urgency=medium
.
* debian/patches/cmake_libint_check.patch: New patch, removes one check from
the Libint detection which is no longer applicable (Closes: #839361).
Checksums-Sha1:
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b8bda30638a53591130529bca0acbb9083d5329c 7096
mpqc3_0.0~git20160216-5.debian.tar.xz
Checksums-Sha256:
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mpqc3_0.0~git20160216-5.dsc
57d4b4e5e3db00d6944f86209dcb454d827466ddc96ea8aada5fd71426c544be 7096
mpqc3_0.0~git20160216-5.debian.tar.xz
Files:
f067e67f5db003f94e908688893b4c23 2158 science optional
mpqc3_0.0~git20160216-5.dsc
03c5714027d72a368accb0fbd60e22d9 7096 science optional
mpqc3_0.0~git20160216-5.debian.tar.xz
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--- End Message ---
