Source: libminc Version: 2.3.00-2 Severity: serious Justification: fails to build from source User: reproducible-bui...@lists.alioth.debian.org Usertags: ftbfs X-Debbugs-Cc: reproducible-bui...@lists.alioth.debian.org
Dear Maintainer, libminc fails to build from source in unstable/amd64: [..] Get:15 http://httpredir.debian.org/debian sid/main amd64 libjpeg-dev all 1:1.5.0-1 [54.8 kB] Get:16 http://httpredir.debian.org/debian sid/main amd64 libaec-dev amd64 0.3.2-1 [17.4 kB] Get:17 http://httpredir.debian.org/debian sid/main amd64 hdf5-helpers amd64 1.8.16+docs-8 [35.4 kB] Get:18 http://httpredir.debian.org/debian sid/main amd64 libhdf5-cpp-11 amd64 1.8.16+docs-8 [126 kB] Get:19 http://httpredir.debian.org/debian sid/main amd64 libhdf5-dev amd64 1.8.16+docs-8 [5032 kB] Get:20 http://httpredir.debian.org/debian sid/main amd64 libcurl4-gnutls-dev amd64 7.50.1-1 [360 kB] Get:21 http://httpredir.debian.org/debian sid/main amd64 libnetcdf-dev amd64 1:4.4.1-1 [76.5 kB] Get:22 http://httpredir.debian.org/debian sid/main amd64 libnifti2 amd64 2.0.0-2 [107 kB] Get:23 http://httpredir.debian.org/debian sid/main amd64 libnifti-dev amd64 2.0.0-2 [138 kB] Fetched 12.7 MB in 0s (75.7 MB/s) Selecting previously unselected package cmake-data. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23248 files and directories currently installed.) Preparing to unpack .../00-cmake-data_3.6.1-1_all.deb ... Unpacking cmake-data (3.6.1-1) ... Selecting previously unselected package liblzo2-2:amd64. Preparing to unpack .../01-liblzo2-2_2.08-1.2_amd64.deb ... Unpacking liblzo2-2:amd64 (2.08-1.2) ... Selecting previously unselected package libarchive13:amd64. Preparing to unpack .../02-libarchive13_3.2.1-2_amd64.deb ... Unpacking libarchive13:amd64 (3.2.1-2) ... Selecting previously unselected package libcurl3:amd64. Preparing to unpack .../03-libcurl3_7.50.1-1_amd64.deb ... Unpacking libcurl3:amd64 (7.50.1-1) ... Selecting previously unselected package libjsoncpp1:amd64. Preparing to unpack .../04-libjsoncpp1_1.7.4-3_amd64.deb ... Unpacking libjsoncpp1:amd64 (1.7.4-3) ... Selecting previously unselected package cmake. Preparing to unpack .../05-cmake_3.6.1-1_amd64.deb ... Unpacking cmake (3.6.1-1) ... Selecting previously unselected package libgfortran3:amd64. Preparing to unpack .../06-libgfortran3_6.2.0-1_amd64.deb ... Unpacking libgfortran3:amd64 (6.2.0-1) ... Selecting previously unselected package libaec0:amd64. Preparing to unpack .../07-libaec0_0.3.2-1_amd64.deb ... Unpacking libaec0:amd64 (0.3.2-1) ... Selecting previously unselected package libsz2:amd64. Preparing to unpack .../08-libsz2_0.3.2-1_amd64.deb ... Unpacking libsz2:amd64 (0.3.2-1) ... Selecting previously unselected package libhdf5-10:amd64. Preparing to unpack .../09-libhdf5-10_1.8.16+docs-8_amd64.deb ... Unpacking libhdf5-10:amd64 (1.8.16+docs-8) ... Selecting previously unselected package libnetcdf11. Preparing to unpack .../10-libnetcdf11_1%3a4.4.1-1_amd64.deb ... Unpacking libnetcdf11 (1:4.4.1-1) ... Selecting previously unselected package zlib1g-dev:amd64. Preparing to unpack .../11-zlib1g-dev_1%3a1.2.8.dfsg-2+b1_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.2.8.dfsg-2+b1) ... Selecting previously unselected package libjpeg62-turbo:amd64. Preparing to unpack .../12-libjpeg62-turbo_1%3a1.5.0-1_amd64.deb ... Unpacking libjpeg62-turbo:amd64 (1:1.5.0-1) ... Selecting previously unselected package libjpeg62-turbo-dev:amd64. Preparing to unpack .../13-libjpeg62-turbo-dev_1%3a1.5.0-1_amd64.deb ... Unpacking libjpeg62-turbo-dev:amd64 (1:1.5.0-1) ... Selecting previously unselected package libjpeg-dev. Preparing to unpack .../14-libjpeg-dev_1%3a1.5.0-1_all.deb ... Unpacking libjpeg-dev (1:1.5.0-1) ... Selecting previously unselected package libaec-dev:amd64. Preparing to unpack .../15-libaec-dev_0.3.2-1_amd64.deb ... Unpacking libaec-dev:amd64 (0.3.2-1) ... Selecting previously unselected package hdf5-helpers. Preparing to unpack .../16-hdf5-helpers_1.8.16+docs-8_amd64.deb ... Unpacking hdf5-helpers (1.8.16+docs-8) ... Selecting previously unselected package libhdf5-cpp-11:amd64. Preparing to unpack .../17-libhdf5-cpp-11_1.8.16+docs-8_amd64.deb ... Unpacking libhdf5-cpp-11:amd64 (1.8.16+docs-8) ... Selecting previously unselected package libhdf5-dev. Preparing to unpack .../18-libhdf5-dev_1.8.16+docs-8_amd64.deb ... Unpacking libhdf5-dev (1.8.16+docs-8) ... Selecting previously unselected package libcurl4-gnutls-dev:amd64. Preparing to unpack .../19-libcurl4-gnutls-dev_7.50.1-1_amd64.deb ... Unpacking libcurl4-gnutls-dev:amd64 (7.50.1-1) ... Selecting previously unselected package libnetcdf-dev. Preparing to unpack .../20-libnetcdf-dev_1%3a4.4.1-1_amd64.deb ... Unpacking libnetcdf-dev (1:4.4.1-1) ... Selecting previously unselected package libnifti2. Preparing to unpack .../21-libnifti2_2.0.0-2_amd64.deb ... Unpacking libnifti2 (2.0.0-2) ... Selecting previously unselected package libnifti-dev. Preparing to unpack .../22-libnifti-dev_2.0.0-2_amd64.deb ... Unpacking libnifti-dev (2.0.0-2) ... Setting up libaec0:amd64 (0.3.2-1) ... Setting up libnifti2 (2.0.0-2) ... Setting up libjpeg62-turbo:amd64 (1:1.5.0-1) ... Setting up libcurl3:amd64 (7.50.1-1) ... Setting up libgfortran3:amd64 (6.2.0-1) ... Setting up cmake-data (3.6.1-1) ... Setting up libnifti-dev (2.0.0-2) ... Processing triggers for libc-bin (2.23-5) ... Processing triggers for man-db (2.7.5-1) ... Setting up libjpeg62-turbo-dev:amd64 (1:1.5.0-1) ... Setting up libcurl4-gnutls-dev:amd64 (7.50.1-1) ... Setting up hdf5-helpers (1.8.16+docs-8) ... Setting up liblzo2-2:amd64 (2.08-1.2) ... Setting up libsz2:amd64 (0.3.2-1) ... Setting up zlib1g-dev:amd64 (1:1.2.8.dfsg-2+b1) ... Setting up libjsoncpp1:amd64 (1.7.4-3) ... Setting up libhdf5-10:amd64 (1.8.16+docs-8) ... Setting up libhdf5-cpp-11:amd64 (1.8.16+docs-8) ... Setting up libarchive13:amd64 (3.2.1-2) ... Setting up libaec-dev:amd64 (0.3.2-1) ... Setting up libhdf5-dev (1.8.16+docs-8) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libjpeg-dev (1:1.5.0-1) ... Setting up cmake (3.6.1-1) ... Setting up libnetcdf11 (1:4.4.1-1) ... Setting up libnetcdf-dev (1:4.4.1-1) ... Setting up libminc-build-deps (2.3.00-2) ... Processing triggers for libc-bin (2.23-5) ... ************************************************************************************** ** Environment ** ************************************************************************************** PATH=/home/lamby/git/projects/dotfiles/dotfiles/..//bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin HOSTNAME=ff03e8606951 TERM=xterm PAGER=more DISPLAY=:0 DOCKER_IMAGE=lamby-debian-sid DEB_BUILD_OPTIONS=parallel=9 PIP_DOWNLOAD_CACHE=/home/lamby/.cache/pip HOME=/home/lamby LOGNAME=lamby SHLVL=1 PWD=/home/lamby/temp/cdt.20160825112354.7wJltpfGDK.db.libminc/libminc-2.3.00 OLDPWD=/home/lamby/temp/cdt.20160825112354.7wJltpfGDK.db.libminc GPG_TTY=/dev/console QUILT_PATCHES=debian/patches QUILT_NO_DIFF_INDEX=1 QUILT_REFRESH_ARGS=-p ab --no-timestamps --no-index DEBEMAIL=la...@debian.org DEBFULLNAME=Chris Lamb EDITOR=vim LESS=-cgiFx4M GPG_KEY=1E953E27D4311E58 BLASTER=A220 I5 D1 H5 P330 T6 _=/usr/bin/env ************************************************************************************** ** Building libminc 2.3.00-2 on amd64 ** ************************************************************************************** dpkg-buildpackage -rfakeroot -D -us -uc -b dpkg-buildpackage: info: source package libminc dpkg-buildpackage: info: source version 2.3.00-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Steve M. Robbins <s...@debian.org> dpkg-source --before-build libminc-2.3.00 dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean dh_testdir dh_auto_clean dh_clean debian/rules build dh build dh_testdir dh_update_autotools_config debian/rules override_dh_auto_configure make[1]: Entering directory '/home/lamby/temp/cdt.20160825112354.7wJltpfGDK.db.libminc/libminc-2.3.00' rm -f cmake-modules/*HDF5* dh_auto_configure -- -DLIB_SUFFIX=/x86_64-linux-gnu -DBUILD_TESTING:BOOL=ON -DLIBMINC_BUILD_EZMINC_EXAMPLES:BOOL=ON -DLIBMINC_BUILD_SHARED_LIBS:BOOL=ON -DLIBMINC_MINC1_SUPPORT:BOOL=ON cmake .. -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DLIB_SUFFIX=/x86_64-linux-gnu -DBUILD_TESTING:BOOL=ON -DLIBMINC_BUILD_EZMINC_EXAMPLES:BOOL=ON -DLIBMINC_BUILD_SHARED_LIBS:BOOL=ON -DLIBMINC_MINC1_SUPPORT:BOOL=ON -- The C compiler identification is GNU 6.2.0 -- The CXX compiler identification is GNU 6.2.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found NetCDF headers: /usr/include -- Found NetCDF library: /usr/lib/x86_64-linux-gnu/libnetcdf.so -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.2.8") -- HDF5: Using hdf5 compiler wrapper to determine C configuration -- HDF5: Using hdf5 compiler wrapper to determine CXX configuration -- Found HDF5: /usr/lib/x86_64-linux-gnu/libhdf5_cpp.so;/usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so;/usr/lib/x86_64-linux-gnu/libpthread.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so (found version "1.8.16") -- Looking for mkstemp -- Looking for mkstemp - found -- Looking for tmpnam -- Looking for tmpnam - found -- Looking for tempnam -- Looking for tempnam - found -- Looking for strerror -- Looking for strerror - found -- Looking for popen -- Looking for popen - found -- Looking for fork -- Looking for fork - found -- Looking for vfork -- Looking for vfork - found -- Looking for fdopen -- Looking for fdopen - found -- Looking for strdup -- Looking for strdup - found -- Looking for getpwnam -- Looking for getpwnam - found -- Looking for select -- Looking for select - found -- Looking for sysconf -- Looking for sysconf - found -- Looking for system -- Looking for system - found -- Looking for srand48 -- Looking for srand48 - found -- Looking for drand48 -- Looking for drand48 - found -- Looking for sleep -- Looking for sleep - found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for clock_gettime in rt -- Looking for clock_gettime in rt - found -- Looking for include file float.h -- Looking for include file float.h - found -- Looking for include file sys/dir.h -- Looking for include file sys/dir.h - found -- Looking for include file sys/ndir.h -- Looking for include file sys/ndir.h - not found -- Looking for include file sys/stat.h -- Looking for include file sys/stat.h - found -- Looking for include file sys/types.h -- Looking for include file sys/types.h - found -- Looking for include file sys/wait.h -- Looking for include file sys/wait.h - found -- Looking for include file sys/time.h -- Looking for include file sys/time.h - found -- Looking for include file values.h -- Looking for include file values.h - found -- Looking for include file unistd.h -- Looking for include file unistd.h - found -- Looking for include file dirent.h -- Looking for include file dirent.h - found -- Looking for include file memory.h -- Looking for include file memory.h - found -- Looking for include file stdlib.h -- Looking for include file stdlib.h - found -- Looking for include file fcntl.h -- Looking for include file fcntl.h - found -- Looking for include file dlfcn.h -- Looking for include file dlfcn.h - found -- Looking for include file vfork.h -- Looking for include file vfork.h - not found -- Looking for include file inttypes.h -- Looking for include file inttypes.h - found -- Looking for include file string.h -- Looking for include file string.h - found -- Looking for include file strings.h -- Looking for include file strings.h - found -- Looking for include file pwd.h -- Looking for include file pwd.h - found -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /home/lamby/temp/cdt.20160825112354.7wJltpfGDK.db.libminc/libminc-2.3.00/obj-x86_64-linux-gnu make[1]: Leaving directory '/home/lamby/temp/cdt.20160825112354.7wJltpfGDK.db.libminc/libminc-2.3.00' dh_auto_build make -j1 make[1]: Entering directory '/home/lamby/temp/cdt.20160825112354.7wJltpfGDK.db.libminc/libminc-2.3.00/obj-x86_64-linux-gnu' /usr/bin/cmake -H/home/lamby/temp/cdt.20160825112354.7wJltpfGDK.db.libminc/libminc-2.3.00 -B/home/lamby/temp/cdt.20160825112354.7wJltpfGDK.db.libminc/libminc-2.3.00/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /home/lamby/temp/cdt.20160825112354.7wJltpfGDK.db.libminc/libminc-2.3.00/obj-x86_64-linux-gnu/CMakeFiles /home/lamby/temp/cdt.20160825112354.7wJltpfGDK.db.libminc/libminc-2.3.00/obj-x86_64-linux-gnu/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/home/lamby/temp/cdt.20160825112354.7wJltpfGDK.db.libminc/libminc-2.3.00/obj-x86_64-linux-gnu' make -f CMakeFiles/minc2_static.dir/build.make CMakeFiles/minc2_static.dir/depend make[3]: Entering directory '/home/lamby/temp/cdt.20160825112354.7wJltpfGDK.db.libminc/libminc-2.3.00/obj-x86_64-linux-gnu' cd /home/lamby/temp/cdt.20160825112354.7wJltpfGDK.db.libminc/libminc-2.3.00/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/lamby/temp/cdt.20160825112354.7wJltpfGDK.db.libminc/libminc-2.3.00 /home/lamby/temp/cdt.20160825112354.7wJltpfGDK.db.libminc/libminc-2.3.00 /home/lamby/temp/cdt.20160825112354.7wJltpfGDK.db.libminc/libminc-2.3.00/obj-x86_64-linux-gnu /home/lamby/temp/cdt.20160825112354.7wJltpfGDK.db.libminc/libminc-2.3.00/obj-x86_64-linux-gnu /home/lamby/temp/cdt.20160825112354.7wJltpfGDK.db.libminc/libminc-2.3.00/obj-x86_64-linux-gnu/CMakeFiles/minc2_static.dir/DependInfo.cmake --color= Scanning dependencies of target minc2_static make[3]: Leaving directory '/home/lamby/temp/cdt.20160825112354.7wJltpfGDK.db.libminc/libminc-2.3.00/obj-x86_64-linux-gnu' make -f CMakeFiles/minc2_static.dir/build.make CMakeFiles/minc2_static.dir/build make[3]: Entering directory '/home/lamby/temp/cdt.20160825112354.7wJltpfGDK.db.libminc/libminc-2.3.00/obj-x86_64-linux-gnu' [ 1%] Building C object CMakeFiles/minc2_static.dir/libsrc2/convert.c.o /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DMINC2=1 -I/home/lamby/temp/cdt.20160825112354.7wJltpfGDK.db.libminc/libminc-2.3.00 -I/home/lamby/temp/cdt.20160825112354.7wJltpfGDK.db.libminc/libminc-2.3.00/obj-x86_64-linux-gnu -I/home/lamby/temp/cdt.20160825112354.7wJltpfGDK.db.libminc/libminc-2.3.00/libsrc2 -I/home/lamby/temp/cdt.20160825112354.7wJltpfGDK.db.libminc/libminc-2.3.00/libsrc -I/home/lamby/temp/cdt.20160825112354.7wJltpfGDK.db.libminc/libminc-2.3.00/volume_io/Include -I/home/lamby/temp/cdt.20160825112354.7wJltpfGDK.db.libminc/libminc-2.3.00/ezminc -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20160825112354.7wJltpfGDK.db.libminc/libminc-2.3.00=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -o CMakeFiles/minc2_static.dir/libsrc2/convert.c.o -c /home/lamby/temp/cdt.20160825112354.7wJltpfGDK.db.libminc/libminc-2.3.00/libsrc2/convert.c /home/lamby/temp/cdt.20160825112354.7wJltpfGDK.db.libminc/libminc-2.3.00/libsrc2/convert.c:13:18: fatal error: hdf5.h: No such file or directory #include <hdf5.h> ^ compilation terminated. CMakeFiles/minc2_static.dir/build.make:65: recipe for target 'CMakeFiles/minc2_static.dir/libsrc2/convert.c.o' failed make[3]: *** [CMakeFiles/minc2_static.dir/libsrc2/convert.c.o] Error 1 make[3]: Leaving directory '/home/lamby/temp/cdt.20160825112354.7wJltpfGDK.db.libminc/libminc-2.3.00/obj-x86_64-linux-gnu' CMakeFiles/Makefile2:70: recipe for target 'CMakeFiles/minc2_static.dir/all' failed make[2]: *** [CMakeFiles/minc2_static.dir/all] Error 2 make[2]: Leaving directory '/home/lamby/temp/cdt.20160825112354.7wJltpfGDK.db.libminc/libminc-2.3.00/obj-x86_64-linux-gnu' Makefile:163: recipe for target 'all' failed make[1]: *** [all] Error 2 make[1]: Leaving directory '/home/lamby/temp/cdt.20160825112354.7wJltpfGDK.db.libminc/libminc-2.3.00/obj-x86_64-linux-gnu' dh_auto_build: make -j1 returned exit code 2 debian/rules:14: recipe for target 'build' failed make: *** [build] Error 2 [..] The full build log is attached. Regards, -- ,''`. : :' : Chris Lamb `. `'` la...@debian.org / chris-lamb.co.uk `-
libminc.2.3.00-2.unstable.amd64.log.txt.gz
Description: Binary data
