Source: r-cran-sn Version: 1.3-0-1 Severity: serious Justification: fails to build from source User: reproducible-bui...@lists.alioth.debian.org Usertags: ftbfs X-Debbugs-Cc: reproducible-bui...@lists.alioth.debian.org
Dear Maintainer,
r-cran-sn fails to build from source in unstable/amd64:
[..]
Selecting previously unselected package liblapack3.
Preparing to unpack .../liblapack3_3.6.0-2_amd64.deb ...
Unpacking liblapack3 (3.6.0-2) ...
Selecting previously unselected package fontconfig.
Preparing to unpack .../fontconfig_2.11.0-6.4_amd64.deb ...
Unpacking fontconfig (2.11.0-6.4) ...
Selecting previously unselected package libthai-data.
Preparing to unpack .../libthai-data_0.1.24-2_all.deb ...
Unpacking libthai-data (0.1.24-2) ...
Selecting previously unselected package libdatrie1:amd64.
Preparing to unpack .../libdatrie1_0.2.10-2_amd64.deb ...
Unpacking libdatrie1:amd64 (0.2.10-2) ...
Selecting previously unselected package libthai0:amd64.
Preparing to unpack .../libthai0_0.1.24-2_amd64.deb ...
Unpacking libthai0:amd64 (0.1.24-2) ...
Selecting previously unselected package libpango-1.0-0:amd64.
Preparing to unpack .../libpango-1.0-0_1.40.1-1_amd64.deb ...
Unpacking libpango-1.0-0:amd64 (1.40.1-1) ...
Selecting previously unselected package libgraphite2-3:amd64.
Preparing to unpack .../libgraphite2-3_1.3.8-1_amd64.deb ...
Unpacking libgraphite2-3:amd64 (1.3.8-1) ...
Selecting previously unselected package libharfbuzz0b:amd64.
Preparing to unpack .../libharfbuzz0b_1.2.6-2_amd64.deb ...
Unpacking libharfbuzz0b:amd64 (1.2.6-2) ...
Selecting previously unselected package libpangoft2-1.0-0:amd64.
Preparing to unpack .../libpangoft2-1.0-0_1.40.1-1_amd64.deb ...
Unpacking libpangoft2-1.0-0:amd64 (1.40.1-1) ...
Selecting previously unselected package libpangocairo-1.0-0:amd64.
Preparing to unpack .../libpangocairo-1.0-0_1.40.1-1_amd64.deb ...
Unpacking libpangocairo-1.0-0:amd64 (1.40.1-1) ...
Selecting previously unselected package libsm6:amd64.
Preparing to unpack .../libsm6_2%3a1.2.2-1+b1_amd64.deb ...
Unpacking libsm6:amd64 (2:1.2.2-1+b1) ...
Selecting previously unselected package libtcl8.6:amd64.
Preparing to unpack .../libtcl8.6_8.6.5+dfsg-2_amd64.deb ...
Unpacking libtcl8.6:amd64 (8.6.5+dfsg-2) ...
Selecting previously unselected package libjbig0:amd64.
Preparing to unpack .../libjbig0_2.1-3.1_amd64.deb ...
Unpacking libjbig0:amd64 (2.1-3.1) ...
Selecting previously unselected package libtiff5:amd64.
Preparing to unpack .../libtiff5_4.0.6-1_amd64.deb ...
Unpacking libtiff5:amd64 (4.0.6-1) ...
Selecting previously unselected package libxft2:amd64.
Preparing to unpack .../libxft2_2.3.2-1_amd64.deb ...
Unpacking libxft2:amd64 (2.3.2-1) ...
Selecting previously unselected package libxss1:amd64.
Preparing to unpack .../libxss1_1%3a1.2.2-1_amd64.deb ...
Unpacking libxss1:amd64 (1:1.2.2-1) ...
Selecting previously unselected package libtk8.6:amd64.
Preparing to unpack .../libtk8.6_8.6.5-1_amd64.deb ...
Unpacking libtk8.6:amd64 (8.6.5-1) ...
Selecting previously unselected package libxt6:amd64.
Preparing to unpack .../libxt6_1%3a1.1.5-1_amd64.deb ...
Unpacking libxt6:amd64 (1:1.1.5-1) ...
Selecting previously unselected package openssl.
Preparing to unpack .../openssl_1.0.2h-1_amd64.deb ...
Unpacking openssl (1.0.2h-1) ...
Selecting previously unselected package ca-certificates.
Preparing to unpack .../ca-certificates_20160104_all.deb ...
Unpacking ca-certificates (20160104) ...
Selecting previously unselected package r-base-core.
Preparing to unpack .../r-base-core_3.3.0.20160615-1_amd64.deb ...
Unpacking r-base-core (3.3.0.20160615-1) ...
Selecting previously unselected package libgfortran-5-dev:amd64.
Preparing to unpack .../libgfortran-5-dev_5.4.0-4_amd64.deb ...
Unpacking libgfortran-5-dev:amd64 (5.4.0-4) ...
Selecting previously unselected package gfortran-5.
Preparing to unpack .../gfortran-5_5.4.0-4_amd64.deb ...
Unpacking gfortran-5 (5.4.0-4) ...
Selecting previously unselected package gfortran.
Preparing to unpack .../gfortran_4%3a5.3.1-3_amd64.deb ...
Unpacking gfortran (4:5.3.1-3) ...
Selecting previously unselected package libblas-dev.
Preparing to unpack .../libblas-dev_3.6.0-2_amd64.deb ...
Unpacking libblas-dev (3.6.0-2) ...
Selecting previously unselected package liblapack-dev.
Preparing to unpack .../liblapack-dev_3.6.0-2_amd64.deb ...
Unpacking liblapack-dev (3.6.0-2) ...
Selecting previously unselected package libtinfo-dev:amd64.
Preparing to unpack .../libtinfo-dev_6.0+20160319-1_amd64.deb ...
Unpacking libtinfo-dev:amd64 (6.0+20160319-1) ...
Selecting previously unselected package libncurses5-dev:amd64.
Preparing to unpack .../libncurses5-dev_6.0+20160319-1_amd64.deb ...
Unpacking libncurses5-dev:amd64 (6.0+20160319-1) ...
Selecting previously unselected package libreadline6-dev:amd64.
Preparing to unpack .../libreadline6-dev_6.3-8+b4_amd64.deb ...
Unpacking libreadline6-dev:amd64 (6.3-8+b4) ...
Selecting previously unselected package libreadline-dev:amd64.
Preparing to unpack .../libreadline-dev_6.3-8+b4_amd64.deb ...
Unpacking libreadline-dev:amd64 (6.3-8+b4) ...
Selecting previously unselected package libjpeg62-turbo-dev:amd64.
Preparing to unpack .../libjpeg62-turbo-dev_1%3a1.5.0-1_amd64.deb ...
Unpacking libjpeg62-turbo-dev:amd64 (1:1.5.0-1) ...
Selecting previously unselected package libjpeg-dev.
Preparing to unpack .../libjpeg-dev_1%3a1.5.0-1_all.deb ...
Unpacking libjpeg-dev (1:1.5.0-1) ...
Selecting previously unselected package libpcre16-3:amd64.
Preparing to unpack .../libpcre16-3_2%3a8.38-3.1_amd64.deb ...
Unpacking libpcre16-3:amd64 (2:8.38-3.1) ...
Selecting previously unselected package libpcre32-3:amd64.
Preparing to unpack .../libpcre32-3_2%3a8.38-3.1_amd64.deb ...
Unpacking libpcre32-3:amd64 (2:8.38-3.1) ...
Selecting previously unselected package libpcrecpp0v5:amd64.
Preparing to unpack .../libpcrecpp0v5_2%3a8.38-3.1_amd64.deb ...
Unpacking libpcrecpp0v5:amd64 (2:8.38-3.1) ...
Selecting previously unselected package libpcre3-dev:amd64.
Preparing to unpack .../libpcre3-dev_2%3a8.38-3.1_amd64.deb ...
Unpacking libpcre3-dev:amd64 (2:8.38-3.1) ...
Selecting previously unselected package zlib1g-dev:amd64.
Preparing to unpack .../zlib1g-dev_1%3a1.2.8.dfsg-2+b1_amd64.deb ...
Unpacking zlib1g-dev:amd64 (1:1.2.8.dfsg-2+b1) ...
Selecting previously unselected package libpng-dev:amd64.
Preparing to unpack .../libpng-dev_1.6.23-1_amd64.deb ...
Unpacking libpng-dev:amd64 (1.6.23-1) ...
Selecting previously unselected package libbz2-dev:amd64.
Preparing to unpack .../libbz2-dev_1.0.6-8_amd64.deb ...
Unpacking libbz2-dev:amd64 (1.0.6-8) ...
Selecting previously unselected package liblzma-dev:amd64.
Preparing to unpack .../liblzma-dev_5.1.1alpha+20120614-2.1_amd64.deb ...
Unpacking liblzma-dev:amd64 (5.1.1alpha+20120614-2.1) ...
Selecting previously unselected package icu-devtools.
Preparing to unpack .../icu-devtools_55.1-7_amd64.deb ...
Unpacking icu-devtools (55.1-7) ...
Selecting previously unselected package libicu-dev:amd64.
Preparing to unpack .../libicu-dev_55.1-7_amd64.deb ...
Unpacking libicu-dev:amd64 (55.1-7) ...
Selecting previously unselected package cdbs.
Preparing to unpack .../archives/cdbs_0.4.141_all.deb ...
Unpacking cdbs (0.4.141) ...
Selecting previously unselected package r-base-dev.
Preparing to unpack .../r-base-dev_3.3.0.20160615-1_all.deb ...
Unpacking r-base-dev (3.3.0.20160615-1) ...
Selecting previously unselected package r-cran-mnormt.
Preparing to unpack .../r-cran-mnormt_1.5-4-1_amd64.deb ...
Unpacking r-cran-mnormt (1.5-4-1) ...
Selecting previously unselected package r-cran-numderiv.
Preparing to unpack .../r-cran-numderiv_2014.2-1-1_all.deb ...
Unpacking r-cran-numderiv (2014.2-1-1) ...
Processing triggers for man-db (2.7.5-1) ...
Processing triggers for mime-support (3.60) ...
Processing triggers for libc-bin (2.22-11) ...
Processing triggers for systemd (230-2) ...
Setting up zip (3.0-11) ...
Setting up unzip (6.0-20) ...
Setting up ucf (3.0036) ...
Setting up libpaper1:amd64 (1.1.24+nmu4) ...
Creating config file /etc/papersize with new version
Setting up libpaper-utils (1.1.24+nmu4) ...
Setting up xdg-utils (1.1.1-1) ...
Setting up libgfortran3:amd64 (6.1.1-6) ...
Setting up libblas-common (3.6.0-2) ...
Setting up libblas3 (3.6.0-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide
/usr/lib/libblas.so.3 (libblas.so.3) in auto mode
Setting up libpng16-16:amd64 (1.6.23-1) ...
Setting up libfreetype6:amd64 (2.6.3-3+b1) ...
Setting up fonts-dejavu-core (2.35-1) ...
Setting up fontconfig-config (2.11.0-6.4) ...
Setting up libfontconfig1:amd64 (2.11.0-6.4) ...
Setting up libpixman-1-0:amd64 (0.33.6-1) ...
Setting up libxau6:amd64 (1:1.0.8-1) ...
Setting up libxdmcp6:amd64 (1:1.1.2-1.1) ...
Setting up libxcb1:amd64 (1.11.1-1) ...
Setting up libx11-data (2:1.6.3-1) ...
Setting up libx11-6:amd64 (2:1.6.3-1) ...
Setting up libxcb-render0:amd64 (1.11.1-1) ...
Setting up libxcb-shm0:amd64 (1.11.1-1) ...
Setting up libxext6:amd64 (2:1.3.3-1) ...
Setting up libxrender1:amd64 (1:0.9.9-2) ...
Setting up libcairo2:amd64 (1.14.6-1+b1) ...
Setting up libcurl3:amd64 (7.47.0-1) ...
Setting up x11-common (1:7.7+15) ...
update-rc.d: warning: start and stop actions are no longer supported; falling
back to defaults
invoke-rc.d: could not determine current runlevel
invoke-rc.d: policy-rc.d denied execution of start.
Setting up libice6:amd64 (2:1.0.9-1+b1) ...
Setting up libjpeg62-turbo:amd64 (1:1.5.0-1) ...
Setting up liblapack3 (3.6.0-2) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide
/usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode
Setting up fontconfig (2.11.0-6.4) ...
Regenerating fonts cache... done.
Setting up libthai-data (0.1.24-2) ...
Setting up libdatrie1:amd64 (0.2.10-2) ...
Setting up libthai0:amd64 (0.1.24-2) ...
Setting up libpango-1.0-0:amd64 (1.40.1-1) ...
Setting up libgraphite2-3:amd64 (1.3.8-1) ...
Setting up libharfbuzz0b:amd64 (1.2.6-2) ...
Setting up libpangoft2-1.0-0:amd64 (1.40.1-1) ...
Setting up libpangocairo-1.0-0:amd64 (1.40.1-1) ...
Setting up libsm6:amd64 (2:1.2.2-1+b1) ...
Setting up libtcl8.6:amd64 (8.6.5+dfsg-2) ...
Setting up libjbig0:amd64 (2.1-3.1) ...
Setting up libtiff5:amd64 (4.0.6-1) ...
Setting up libxft2:amd64 (2.3.2-1) ...
Setting up libxss1:amd64 (1:1.2.2-1) ...
Setting up libtk8.6:amd64 (8.6.5-1) ...
Setting up libxt6:amd64 (1:1.1.5-1) ...
Setting up openssl (1.0.2h-1) ...
Setting up ca-certificates (20160104) ...
Setting up r-base-core (3.3.0.20160615-1) ...
Creating config file /etc/R/Renviron with new version
Setting up libgfortran-5-dev:amd64 (5.4.0-4) ...
Setting up gfortran-5 (5.4.0-4) ...
Setting up gfortran (4:5.3.1-3) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in
auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in
auto mode
Setting up libblas-dev (3.6.0-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so to provide
/usr/lib/libblas.so (libblas.so) in auto mode
Setting up liblapack-dev (3.6.0-2) ...
update-alternatives: using /usr/lib/lapack/liblapack.so to provide
/usr/lib/liblapack.so (liblapack.so) in auto mode
Setting up libtinfo-dev:amd64 (6.0+20160319-1) ...
Setting up libncurses5-dev:amd64 (6.0+20160319-1) ...
Setting up libreadline6-dev:amd64 (6.3-8+b4) ...
Setting up libreadline-dev:amd64 (6.3-8+b4) ...
Setting up libjpeg62-turbo-dev:amd64 (1:1.5.0-1) ...
Setting up libjpeg-dev (1:1.5.0-1) ...
Setting up libpcre16-3:amd64 (2:8.38-3.1) ...
Setting up libpcre32-3:amd64 (2:8.38-3.1) ...
Setting up libpcrecpp0v5:amd64 (2:8.38-3.1) ...
Setting up libpcre3-dev:amd64 (2:8.38-3.1) ...
Setting up zlib1g-dev:amd64 (1:1.2.8.dfsg-2+b1) ...
Setting up libpng-dev:amd64 (1.6.23-1) ...
Setting up libbz2-dev:amd64 (1.0.6-8) ...
Setting up liblzma-dev:amd64 (5.1.1alpha+20120614-2.1) ...
Setting up icu-devtools (55.1-7) ...
Setting up libicu-dev:amd64 (55.1-7) ...
Setting up cdbs (0.4.141) ...
Setting up r-base-dev (3.3.0.20160615-1) ...
Setting up r-cran-mnormt (1.5-4-1) ...
Setting up r-cran-numderiv (2014.2-1-1) ...
Setting up r-cran-sn-build-deps (1.3-0-1) ...
Processing triggers for libc-bin (2.22-11) ...
Processing triggers for systemd (230-2) ...
Processing triggers for ca-certificates (20160104) ...
Updating certificates in /etc/ssl/certs...
173 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
**************************************************************************************
** Environment
**
**************************************************************************************
PATH=/home/lamby/git/projects/dotfiles/dotfiles/..//bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
HOSTNAME=bd699cb56110
TERM=xterm
PAGER=more
DISPLAY=:0
DOCKER_IMAGE=lamby-debian-sid
DEB_BUILD_OPTIONS=parallel=9
PIP_DOWNLOAD_CACHE=/home/lamby/.cache/pip
HOME=/home/lamby
LOGNAME=lamby
SHLVL=1
PWD=/home/lamby/temp/cdt.20160621104739.7QzxtvThG4.r-cran-sn/r-cran-sn-1.3-0
OLDPWD=/home/lamby/temp/cdt.20160621104739.7QzxtvThG4.r-cran-sn
GPG_TTY=/dev/console
QUILT_PATCHES=debian/patches
QUILT_NO_DIFF_INDEX=1
QUILT_REFRESH_ARGS=-p ab --no-timestamps --no-index
DEBEMAIL=la...@debian.org
DEBFULLNAME=Chris Lamb
EDITOR=vim
LESS=-cgiFx4M
BLASTER=A220 I5 D1 H5 P330 T6
_=/usr/bin/env
**************************************************************************************
** Building r-cran-sn 1.3-0-1 on amd64
**
**************************************************************************************
dpkg-buildpackage -rfakeroot -D -us -uc -b
dpkg-buildpackage: info: source package r-cran-sn
dpkg-buildpackage: info: source version 1.3-0-1
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Dirk Eddelbuettel <e...@debian.org>
dpkg-source --before-build r-cran-sn-1.3-0
dpkg-buildpackage: info: host architecture amd64
fakeroot debian/rules clean
CDBS WARNING: simple-patchsys.mk is deprecated since 0.4.85 - please use
source format 3.0 (quilt) instead
test -x debian/rules
/usr/bin/make -f debian/rules reverse-config
make[1]: Entering directory
'/home/lamby/temp/cdt.20160621104739.7QzxtvThG4.r-cran-sn/r-cran-sn-1.3-0'
CDBS WARNING: simple-patchsys.mk is deprecated since 0.4.85 - please use
source format 3.0 (quilt) instead
make[1]: 'reverse-config' is up to date.
make[1]: Leaving directory
'/home/lamby/temp/cdt.20160621104739.7QzxtvThG4.r-cran-sn/r-cran-sn-1.3-0'
if [ "reverse-patches" = "reverse-patches" ]; then rm -f
debian/stamp-patched; fi
patches:
if [ "reverse-patches" != "reverse-patches" ]; then touch
debian/stamp-patched; fi
if [ "reverse-patches" != "reverse-patches" ] ; then \
/usr/bin/make -f debian/rules update-config ; \
fi
for dir in debian/patches ; do \
rm -f $dir/*.log ; \
done
dh_clean
dh_clean: Please specify the compatibility level in debian/compat
/usr/share/cdbs/1/rules/debhelper.mk:217: recipe for target 'clean' failed
make: *** [clean] Error 2
[..]
The full build log is attached.
Regards,
--
,''`.
: :' : Chris Lamb
`. `'` la...@debian.org / chris-lamb.co.uk
`-
r-cran-sn.1.3-0-1.unstable.amd64.log.txt.gz
Description: Binary data
