Your message dated Thu, 25 Feb 2016 16:13:12 -0500
with message-id <[email protected]>
and subject line Re: Fwd: [Debian-med-packaging] python-mne is marked for
autoremoval from testing
has caused the Debian Bug report #813982,
regarding python-mne: FTBFS: IndexError: an index can only have a single
ellipsis ('...')
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
813982: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=813982
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: python-mne
Version: 0.10.1+dfsg-1
Severity: serious
Justification: fails to build from source
User: [email protected]
Usertags: ftbfs
X-Debbugs-Cc: [email protected]
Dear Maintainer,
python-mne fails to build from source in unstable/amd64:
[..]
======================================================================
ERROR: Test PSD estimation on epochs
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python2.7/dist-packages/nose/case.py", line 197, in runTest
self.test(*self.arg)
File "/usr/lib/python2.7/dist-packages/numpy/testing/decorators.py", line
147, in skipper_func
return f(*args, **kwargs)
File
"/home/lamby/temp/cdt.20160207103006.4o4ykTzhLo/python-mne-0.10.1+dfsg/mne/time_frequency/tests/test_psd.py",
line 95, in test_psd_epochs
n_fft=n_fft, picks=picks)
File "<string>", line 2, in compute_epochs_psd
File
"/home/lamby/temp/cdt.20160207103006.4o4ykTzhLo/python-mne-0.10.1+dfsg/mne/utils.py",
line 551, in verbose
return function(*args, **kwargs)
File
"/home/lamby/temp/cdt.20160207103006.4o4ykTzhLo/python-mne-0.10.1+dfsg/mne/time_frequency/psd.py",
line 171, in compute_epochs_psd
data = epochs.get_data()[:, picks][..., time_mask]
IndexError: an index can only have a single ellipsis ('...')
-------------------- >> begin captured stdout << ---------------------
Opening raw data file
/home/lamby/temp/cdt.20160207103006.4o4ykTzhLo/python-mne-0.10.1+dfsg/mne/io/tests/data/test_raw.fif...
Read a total of 3 projection items:
PCA-v1 (1 x 102) idle
PCA-v2 (1 x 102) idle
PCA-v3 (1 x 102) idle
Current compensation grade : 0
Range : 25800 ... 40199 = 42.956 ... 66.930 secs
Ready.
Adding average EEG reference projection.
1 projection items deactivated
2 matching events found
Reading 2671 ... 3271 = 4.447 ... 5.446 secs...
[done]
Applying baseline correction ... (mode: mean)
Reading 4350 ... 4950 = 7.243 ... 8.242 secs...
[done]
Applying baseline correction ... (mode: mean)
0 bad epochs dropped
2 matching events found
Reading 2370 ... 3572 = 3.946 ... 5.947 secs...
[done]
Applying baseline correction ... (mode: mean)
Reading 4049 ... 5251 = 6.741 ... 8.743 secs...
[done]
Applying baseline correction ... (mode: mean)
0 bad epochs dropped
--------------------- >> end captured stdout << ----------------------
======================================================================
ERROR: Test plotting epochs psd (+topomap)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python2.7/dist-packages/nose/case.py", line 197, in runTest
self.test(*self.arg)
File "/usr/lib/python2.7/dist-packages/numpy/testing/decorators.py", line
147, in skipper_func
return f(*args, **kwargs)
File
"/home/lamby/temp/cdt.20160207103006.4o4ykTzhLo/python-mne-0.10.1+dfsg/mne/viz/tests/test_epochs.py",
line 164, in test_plot_psd_epochs
epochs.plot_psd()
File
"/home/lamby/temp/cdt.20160207103006.4o4ykTzhLo/python-mne-0.10.1+dfsg/mne/epochs.py",
line 868, in plot_psd
verbose=None, show=show)
File "<string>", line 2, in plot_epochs_psd
File
"/home/lamby/temp/cdt.20160207103006.4o4ykTzhLo/python-mne-0.10.1+dfsg/mne/utils.py",
line 551, in verbose
return function(*args, **kwargs)
File
"/home/lamby/temp/cdt.20160207103006.4o4ykTzhLo/python-mne-0.10.1+dfsg/mne/viz/epochs.py",
line 495, in plot_epochs_psd
n_jobs=n_jobs)
File "<string>", line 2, in compute_epochs_psd
File
"/home/lamby/temp/cdt.20160207103006.4o4ykTzhLo/python-mne-0.10.1+dfsg/mne/utils.py",
line 551, in verbose
return function(*args, **kwargs)
File
"/home/lamby/temp/cdt.20160207103006.4o4ykTzhLo/python-mne-0.10.1+dfsg/mne/time_frequency/psd.py",
line 171, in compute_epochs_psd
data = epochs.get_data()[:, picks][..., time_mask]
IndexError: an index can only have a single ellipsis ('...')
-------------------- >> begin captured stdout << ---------------------
Opening raw data file
/home/lamby/temp/cdt.20160207103006.4o4ykTzhLo/python-mne-0.10.1+dfsg/mne/io/tests/data/test_raw.fif...
Read a total of 3 projection items:
PCA-v1 (1 x 102) idle
PCA-v2 (1 x 102) idle
PCA-v3 (1 x 102) idle
Current compensation grade : 0
Range : 25800 ... 40199 = 42.956 ... 66.930 secs
Ready.
Adding average EEG reference projection.
1 projection items deactivated
1 matching events found
Created an SSP operator (subspace dimension = 3)
4 projection items activated
Reading 2911 ... 3572 = 4.847 ... 5.947 secs...
[done]
Applying baseline correction ... (mode: mean)
0 bad epochs dropped
--------------------- >> end captured stdout << ----------------------
----------------------------------------------------------------------
Ran 549 tests in 306.354s
FAILED (SKIP=193, errors=2)
debian/rules:19: recipe for target 'override_dh_auto_test' failed
make[1]: *** [override_dh_auto_test] Error 1
make[1]: Leaving directory
'/home/lamby/temp/cdt.20160207103006.4o4ykTzhLo/python-mne-0.10.1+dfsg'
debian/rules:7: recipe for target 'build' failed
make: *** [build] Error 2
[..]
The full build log is attached.
Regards,
--
,''`.
: :' : Chris Lamb
`. `'` [email protected] / chris-lamb.co.uk
`-
python-mne.0.10.1+dfsg-1.unstable.amd64.log.txt.gz
Description: Binary data
--- End Message ---
--- Begin Message ---
Version: 0.10.2
On Thu, 25 Feb 2016, Yaroslav Halchenko wrote:
> > AFAIK this commit:
> > https://github.com/jaeilepp/mne-python/commit/59167d767da5c400855265ccc3924285865e9452
> > should do the job.
> ah cool -- so it is a part of bugfix release
> $> git describe --contains 59167d767da5c400855265ccc3924285865e9452
> v0.10.2^2
hold on ;) this one is old release! ;) and past what we have in
debian... so hereby I am just closing this issue marking it as resolved
in 0.10.2 (we have 0.11 in debian)
--
Yaroslav O. Halchenko
Center for Open Neuroscience http://centerforopenneuroscience.org
Dartmouth College, 419 Moore Hall, Hinman Box 6207, Hanover, NH 03755
Phone: +1 (603) 646-9834 Fax: +1 (603) 646-1419
WWW: http://www.linkedin.com/in/yarik
--- End Message ---
