Bug#810522: marked as done (pyfftw: FTBFS: TypeError: can't pickle Cython.Compiler.FlowControl.NameAssignment objects)

[Debian Bug Tracking System]

Your message dated Wed, 10 Feb 2016 11:49:37 +0000
with message-id <e1atth7-0007pl...@franck.debian.org>
and subject line Bug#810522: fixed in pyfftw 0.10.1+dfsg1-1
has caused the Debian Bug report #810522,
regarding pyfftw: FTBFS: TypeError: can't pickle 
Cython.Compiler.FlowControl.NameAssignment objects
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
810522: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=810522
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems

--- Begin Message ---

Source: pyfftw
Version: 0.9.2+dfsg-4
Severity: serious
Justification: fails to build from source
User: reproducible-bui...@lists.alioth.debian.org
Usertags: ftbfs
X-Debbugs-Cc: reproducible-bui...@lists.alioth.debian.org

Dear Maintainer,

pyfftw fails to build from source in unstable/amd64:

  [..]

  running build_ext
  cythoning 
/home/lamby/temp/cdt.20160109134223.7UcXM1tWEg/pyfftw-0.9.2+dfsg/pyfftw/pyfftw.pyx
 to 
/home/lamby/temp/cdt.20160109134223.7UcXM1tWEg/pyfftw-0.9.2+dfsg/pyfftw/pyfftw.c
  Traceback (most recent call last):
    File "setup.py", line 182, in <module>
      setup(**setup_args)
    File "/usr/lib/python3.5/distutils/core.py", line 148, in setup
      dist.run_commands()
    File "/usr/lib/python3.5/distutils/dist.py", line 955, in run_commands
      self.run_command(cmd)
    File "/usr/lib/python3.5/distutils/dist.py", line 974, in run_command
      cmd_obj.run()
    File "/usr/lib/python3.5/distutils/command/build.py", line 135, in run
      self.run_command(cmd_name)
    File "/usr/lib/python3.5/distutils/cmd.py", line 313, in run_command
      self.distribution.run_command(command)
    File "/usr/lib/python3.5/distutils/dist.py", line 974, in run_command
      cmd_obj.run()
    File "/usr/lib/python3/dist-packages/Cython/Distutils/build_ext.py", line 
164, in run
      _build_ext.build_ext.run(self)
    File "/usr/lib/python3.5/distutils/command/build_ext.py", line 338, in run
      self.build_extensions()
    File "/usr/lib/python3/dist-packages/Cython/Distutils/build_ext.py", line 
171, in build_extensions
      ext.sources = self.cython_sources(ext.sources, ext)
    File "/usr/lib/python3/dist-packages/Cython/Distutils/build_ext.py", line 
320, in cython_sources
      full_module_name=module_name)
    File "/usr/lib/python3/dist-packages/Cython/Compiler/Main.py", line 677, in 
compile
      return compile_single(source, options, full_module_name)
    File "/usr/lib/python3/dist-packages/Cython/Compiler/Main.py", line 630, in 
compile_single
      return run_pipeline(source, options, full_module_name)
    File "/usr/lib/python3/dist-packages/Cython/Compiler/Main.py", line 487, in 
run_pipeline
      err, enddata = Pipeline.run_pipeline(pipeline, source)
    File "/usr/lib/python3/dist-packages/Cython/Compiler/Pipeline.py", line 
328, in run_pipeline
      data = phase(data)
    File "/usr/lib/python3/dist-packages/Cython/Compiler/Pipeline.py", line 53, 
in generate_pyx_code_stage
      module_node.process_implementation(options, result)
    File "/usr/lib/python3/dist-packages/Cython/Compiler/ModuleNode.py", line 
118, in process_implementation
      self.generate_c_code(env, options, result)
    File "/usr/lib/python3/dist-packages/Cython/Compiler/ModuleNode.py", line 
339, in generate_c_code
      self.body.generate_function_definitions(env, code)
    File "/usr/lib/python3/dist-packages/Cython/Compiler/Nodes.py", line 436, 
in generate_function_definitions
      stat.generate_function_definitions(env, code)
    File "/usr/lib/python3/dist-packages/Cython/Compiler/Nodes.py", line 436, 
in generate_function_definitions
      stat.generate_function_definitions(env, code)
    File "/usr/lib/python3/dist-packages/Cython/Compiler/Nodes.py", line 3056, 
in generate_function_definitions
      FuncDefNode.generate_function_definitions(self, env, code)
    File "/usr/lib/python3/dist-packages/Cython/Compiler/Nodes.py", line 1923, 
in generate_function_definitions
      self.generate_function_body(env, code)
    File "/usr/lib/python3/dist-packages/Cython/Compiler/Nodes.py", line 1681, 
in generate_function_body
      self.body.generate_execution_code(code)
    File "/usr/lib/python3/dist-packages/Cython/Compiler/Nodes.py", line 442, 
in generate_execution_code
      stat.generate_execution_code(code)
    File "/usr/lib/python3/dist-packages/Cython/Compiler/Nodes.py", line 7024, 
in generate_execution_code
      fresh_finally_clause().generate_execution_code(code)
    File "/usr/lib/python3/dist-packages/Cython/Compiler/Nodes.py", line 7012, 
in fresh_finally_clause
      node_copy = copy.deepcopy(node)
    File "/usr/lib/python3.5/copy.py", line 182, in deepcopy
      y = _reconstruct(x, rv, 1, memo)
    File "/usr/lib/python3.5/copy.py", line 298, in _reconstruct
      state = deepcopy(state, memo)
    File "/usr/lib/python3.5/copy.py", line 155, in deepcopy
      y = copier(x, memo)
    File "/usr/lib/python3.5/copy.py", line 244, in _deepcopy_dict
      y[deepcopy(key, memo)] = deepcopy(value, memo)
    File "/usr/lib/python3.5/copy.py", line 155, in deepcopy
      y = copier(x, memo)
    File "/usr/lib/python3.5/copy.py", line 219, in _deepcopy_list
      y.append(deepcopy(a, memo))
    File "/usr/lib/python3.5/copy.py", line 182, in deepcopy
      y = _reconstruct(x, rv, 1, memo)
    File "/usr/lib/python3.5/copy.py", line 298, in _reconstruct
      state = deepcopy(state, memo)
    File "/usr/lib/python3.5/copy.py", line 155, in deepcopy
      y = copier(x, memo)
    File "/usr/lib/python3.5/copy.py", line 244, in _deepcopy_dict
      y[deepcopy(key, memo)] = deepcopy(value, memo)
    File "/usr/lib/python3.5/copy.py", line 182, in deepcopy
      y = _reconstruct(x, rv, 1, memo)
    File "/usr/lib/python3.5/copy.py", line 298, in _reconstruct
      state = deepcopy(state, memo)
    File "/usr/lib/python3.5/copy.py", line 155, in deepcopy
      y = copier(x, memo)
    File "/usr/lib/python3.5/copy.py", line 244, in _deepcopy_dict
      y[deepcopy(key, memo)] = deepcopy(value, memo)
    File "/usr/lib/python3.5/copy.py", line 155, in deepcopy
      y = copier(x, memo)
    File "/usr/lib/python3.5/copy.py", line 219, in _deepcopy_list
      y.append(deepcopy(a, memo))
    File "/usr/lib/python3.5/copy.py", line 182, in deepcopy
      y = _reconstruct(x, rv, 1, memo)
    File "/usr/lib/python3.5/copy.py", line 298, in _reconstruct
      state = deepcopy(state, memo)
    File "/usr/lib/python3.5/copy.py", line 155, in deepcopy
      y = copier(x, memo)
    File "/usr/lib/python3.5/copy.py", line 244, in _deepcopy_dict
      y[deepcopy(key, memo)] = deepcopy(value, memo)
    File "/usr/lib/python3.5/copy.py", line 182, in deepcopy
      y = _reconstruct(x, rv, 1, memo)
    File "/usr/lib/python3.5/copy.py", line 298, in _reconstruct
      state = deepcopy(state, memo)
    File "/usr/lib/python3.5/copy.py", line 155, in deepcopy
      y = copier(x, memo)
    File "/usr/lib/python3.5/copy.py", line 244, in _deepcopy_dict
      y[deepcopy(key, memo)] = deepcopy(value, memo)
    File "/usr/lib/python3.5/copy.py", line 155, in deepcopy
      y = copier(x, memo)
    File "/usr/lib/python3.5/copy.py", line 219, in _deepcopy_list
      y.append(deepcopy(a, memo))
    File "/usr/lib/python3.5/copy.py", line 182, in deepcopy
      y = _reconstruct(x, rv, 1, memo)
    File "/usr/lib/python3.5/copy.py", line 298, in _reconstruct
      state = deepcopy(state, memo)
    File "/usr/lib/python3.5/copy.py", line 155, in deepcopy
      y = copier(x, memo)
    File "/usr/lib/python3.5/copy.py", line 244, in _deepcopy_dict
      y[deepcopy(key, memo)] = deepcopy(value, memo)
    File "/usr/lib/python3.5/copy.py", line 182, in deepcopy
      y = _reconstruct(x, rv, 1, memo)
    File "/usr/lib/python3.5/copy.py", line 298, in _reconstruct
      state = deepcopy(state, memo)
    File "/usr/lib/python3.5/copy.py", line 155, in deepcopy
      y = copier(x, memo)
    File "/usr/lib/python3.5/copy.py", line 244, in _deepcopy_dict
      y[deepcopy(key, memo)] = deepcopy(value, memo)
    File "/usr/lib/python3.5/copy.py", line 182, in deepcopy
      y = _reconstruct(x, rv, 1, memo)
    File "/usr/lib/python3.5/copy.py", line 315, in _reconstruct
      item = deepcopy(item, memo)
    File "/usr/lib/python3.5/copy.py", line 174, in deepcopy
      rv = reductor(4)
  TypeError: can't pickle Cython.Compiler.FlowControl.NameAssignment objects
  E: pybuild pybuild:274: build: plugin distutils failed with: exit code=1: 
/usr/bin/python3.5 setup.py build 
  dh_auto_build: pybuild --build -i python{version} -p 3.5 3.4 --dir . returned 
exit code 13
  debian/rules:12: recipe for target 'build' failed
  make: *** [build] Error 25

  [..]

The full build log is attached.


Regards,

-- 
      ,''`.
     : :'  :     Chris Lamb
     `. `'`      la...@debian.org / chris-lamb.co.uk
       `-

pyfftw.0.9.2+dfsg-4.unstable.amd64.log.txt.gz
Description: Binary data

--- End Message ---

--- Begin Message ---

Source: pyfftw
Source-Version: 0.10.1+dfsg1-1

We believe that the bug you reported is fixed in the latest version of
pyfftw, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 810...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Ghislain Antony Vaillant <ghisv...@gmail.com> (supplier of updated pyfftw 
package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256

Format: 1.8
Date: Tue, 02 Feb 2016 17:07:23 +0000
Source: pyfftw
Binary: python-pyfftw python-pyfftw-dbg python3-pyfftw python3-pyfftw-dbg
Architecture: source
Version: 0.10.1+dfsg1-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 
<debian-science-maintain...@lists.alioth.debian.org>
Changed-By: Ghislain Antony Vaillant <ghisv...@gmail.com>
Description:
 python-pyfftw - Pythonic wrapper around FFTW - Python 2
 python-pyfftw-dbg - Pythonic wrapper around FFTW - Python 2 (debug)
 python3-pyfftw - Pythonic wrapper around FFTW - Python 3
 python3-pyfftw-dbg - Pythonic wrapper around FFTW - Python 3 (debug)
Closes: 746998 810522
Changes:
 pyfftw (0.10.1+dfsg1-1) unstable; urgency=medium
 .
   * New upstream release. (Closes: #810522)
   * d/watch: add repacksuffix option.
   * d/control: use recommended VCS entries.
   * Update d/control:
     - source: add dh-python and setuptools to Build-Depends.
     - python{3}-h5py: remove manual Depends, use pythondeps and shlibdeps
       instead.
     - python{3}-h5py-dbg: move python{3}-dbg and python{3}-numpy-dbg from
       Recommends to Depends.
   * Update patch queue:
     - Drop patch arm-build.diff.
     - Discover fftw libraries using pkgconfig.
     - Add build dependency on python{3}-pkgconfig.
     Thanks to Aurelien Jarno (Closes: #746998)
   * d/rules: enable clean target by pybuild.
   * d/copyright: update copyright information.
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