Your message dated Sat, 06 Feb 2016 22:23:45 +0000
with message-id <[email protected]>
and subject line Bug#813160: fixed in hdf-eos5 5.1.15.dfsg.1-6
has caused the Debian Bug report #813160,
regarding hdf-eos5: FTBFS: configure:19095: error: HDF5 was linked with SZIP,
but --with-szlib was not given
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
813160: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=813160
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: hdf-eos5
Version: 5.1.15.dfsg.1-4
Severity: serious
Justification: fails to build from source
User: [email protected]
Usertags: ftbfs
X-Debbugs-Cc: [email protected]
Dear Maintainer,
hdf-eos5 fails to build from source in unstable/amd64:
[..]
configure:19095: error: HDF5 was linked with SZIP, but --with-szlib was not
given
## ---------------- ##
## Cache variables. ##
## ---------------- ##
ac_cv_build=x86_64-pc-linux-gnu
ac_cv_c_compiler_gnu=yes
ac_cv_env_CC_set=
ac_cv_env_CC_value=
ac_cv_env_CFLAGS_set=set
ac_cv_env_CFLAGS_value='-g -O2 -fstack-protector-strong -Wformat
-Werror=format-security -D_HDFEOS5_THREADSAFE -Df2cFortran'
ac_cv_env_CPPFLAGS_set=set
ac_cv_env_CPPFLAGS_value='-Wdate-time -D_FORTIFY_SOURCE=2'
ac_cv_env_CPP_set=
ac_cv_env_CPP_value=
ac_cv_env_F77_set=
ac_cv_env_F77_value=
ac_cv_env_FCFLAGS_set=set
ac_cv_env_FCFLAGS_value='-g -O2 -fstack-protector-strong'
ac_cv_env_FC_set=
ac_cv_env_FC_value=
ac_cv_env_FFLAGS_set=set
ac_cv_env_FFLAGS_value='-g -O2 -fstack-protector-strong'
ac_cv_env_LDFLAGS_set=set
ac_cv_env_LDFLAGS_value='-Wl,-z,relro -lpthread'
ac_cv_env_LIBS_set=
ac_cv_env_LIBS_value=
ac_cv_env_build_alias_set=set
ac_cv_env_build_alias_value=x86_64-linux-gnu
ac_cv_env_host_alias_set=
ac_cv_env_host_alias_value=
ac_cv_env_target_alias_set=
ac_cv_env_target_alias_value=
ac_cv_fc_compiler_gnu=yes
ac_cv_header_dlfcn_h=yes
ac_cv_header_hdf5_h=yes
ac_cv_header_inttypes_h=yes
ac_cv_header_memory_h=yes
ac_cv_header_stdc=yes
ac_cv_header_stdint_h=yes
ac_cv_header_stdlib_h=yes
ac_cv_header_string_h=yes
ac_cv_header_strings_h=yes
ac_cv_header_sys_stat_h=yes
ac_cv_header_sys_types_h=yes
ac_cv_header_unistd_h=yes
ac_cv_header_zlib_h=yes
ac_cv_host=x86_64-pc-linux-gnu
ac_cv_lib_hdf5_H5Fcreate=yes
ac_cv_lib_m_ceil=yes
ac_cv_lib_z_compress2=yes
ac_cv_objext=o
ac_cv_path_EGREP='/bin/grep -E'
ac_cv_path_FGREP='/bin/grep -F'
ac_cv_path_GREP=/bin/grep
ac_cv_path_SED=/bin/sed
ac_cv_path_install='/usr/bin/install -c'
ac_cv_path_mkdir=/bin/mkdir
ac_cv_prog_AWK=mawk
ac_cv_prog_CPP='gcc -E'
ac_cv_prog_ac_ct_AR=ar
ac_cv_prog_ac_ct_CC=gcc
ac_cv_prog_ac_ct_FC=gfortran
ac_cv_prog_ac_ct_OBJDUMP=objdump
ac_cv_prog_ac_ct_RANLIB=ranlib
ac_cv_prog_ac_ct_STRIP=strip
ac_cv_prog_cc_c89=
ac_cv_prog_cc_g=yes
ac_cv_prog_fc_g=yes
ac_cv_prog_make_make_set=yes
ac_cv_sizeof_intp=8
am_cv_CC_dependencies_compiler_type=none
am_cv_make_support_nested_variables=yes
am_cv_prog_cc_c_o=yes
he2_cv_fortran90_compiler=yes
he5_cv_32ptr=no
he5_cv_f2cFortran_defined=yes
he5_cv_hdf5_szip_can_decode=yes
he5_cv_hdf5_szip_can_encode=yes
lt_cv_ar_at_file=@
lt_cv_archive_cmds_need_lc=no
lt_cv_deplibs_check_method=pass_all
lt_cv_file_magic_cmd='$MAGIC_CMD'
lt_cv_file_magic_test_file=
lt_cv_ld_reload_flag=-r
lt_cv_nm_interface='BSD nm'
lt_cv_objdir=.libs
lt_cv_path_LD=/usr/bin/ld
lt_cv_path_NM='/usr/bin/nm -B'
lt_cv_path_mainfest_tool=no
lt_cv_prog_compiler_c_o=yes
lt_cv_prog_compiler_c_o_FC=yes
lt_cv_prog_compiler_pic='-fPIC -DPIC'
lt_cv_prog_compiler_pic_FC=-fPIC
lt_cv_prog_compiler_pic_works=yes
lt_cv_prog_compiler_pic_works_FC=yes
lt_cv_prog_compiler_rtti_exceptions=no
lt_cv_prog_compiler_static_works=yes
lt_cv_prog_compiler_static_works_FC=yes
lt_cv_prog_gnu_ld=yes
lt_cv_sharedlib_from_linklib_cmd='printf %s\n'
lt_cv_shlibpath_overrides_runpath=no
lt_cv_sys_global_symbol_pipe='sed -n -e '\''s/^.*[
]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][
]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p'\'' | sed '\''/ __gnu_lto/d'\'''
lt_cv_sys_global_symbol_to_c_name_address='sed -n -e '\''s/^: \([^ ]*\)[ ]*$/
{\"\1\", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \([^ ]*\)$/
{"\2", (void *) \&\2},/p'\'''
lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='sed -n -e '\''s/^: \([^
]*\)[ ]*$/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\)
\(lib[^ ]*\)$/ {"\2", (void *) \&\2},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\)
\([^ ]*\)$/ {"lib\2", (void *) \&\2},/p'\'''
lt_cv_sys_global_symbol_to_cdecl='sed -n -e '\''s/^T .* \(.*\)$/extern int
\1();/p'\'' -e '\''s/^[ABCDGIRSTW]* .* \(.*\)$/extern char \1;/p'\'''
lt_cv_sys_max_cmd_len=1572864
lt_cv_to_host_file_cmd=func_convert_file_noop
lt_cv_to_tool_file_cmd=func_convert_file_noop
## ----------------- ##
## Output variables. ##
## ----------------- ##
ACLOCAL='${SHELL}
/home/lamby/temp/cdt.20160130001950.M1VKk1na8D/hdf-eos5-5.1.15.dfsg.1/config/missing
aclocal-1.15'
AMDEPBACKSLASH=''
AMDEP_FALSE=''
AMDEP_TRUE='#'
AMTAR='$${TAR-tar}'
AM_BACKSLASH='\'
AM_DEFAULT_V='$(AM_DEFAULT_VERBOSITY)'
AM_DEFAULT_VERBOSITY='1'
AM_V='$(V)'
AR='ar'
AUTOCONF='${SHELL}
/home/lamby/temp/cdt.20160130001950.M1VKk1na8D/hdf-eos5-5.1.15.dfsg.1/config/missing
autoconf'
AUTOHEADER='${SHELL}
/home/lamby/temp/cdt.20160130001950.M1VKk1na8D/hdf-eos5-5.1.15.dfsg.1/config/missing
autoheader'
AUTOMAKE='${SHELL}
/home/lamby/temp/cdt.20160130001950.M1VKk1na8D/hdf-eos5-5.1.15.dfsg.1/config/missing
automake-1.15'
AWK='mawk'
CC='gcc'
CCDEPMODE='depmode=none'
CFLAGS='-g -O2 -fstack-protector-strong -Wformat -Werror=format-security
-D_HDFEOS5_THREADSAFE -Df2cFortran -I/usr/include/hdf5/serial'
CPP='gcc -E'
CPPFLAGS='-Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial'
CYGPATH_W='echo'
DEFS=''
DEPDIR='.deps'
DLLTOOL='false'
DSYMUTIL=''
DUMPBIN=''
ECHO_C=''
ECHO_N='-n'
ECHO_T=''
EGREP='/bin/grep -E'
EXEEXT=''
F2CFORTRAN_32PTR_CONDITIONAL_FALSE=''
F2CFORTRAN_32PTR_CONDITIONAL_TRUE=''
F2CFORTRAN_90_CONDITIONAL_FALSE=''
F2CFORTRAN_90_CONDITIONAL_TRUE=''
F2CFORTRAN_CONDITIONAL_FALSE=''
F2CFORTRAN_CONDITIONAL_TRUE=''
F77='gfortran'
FC='gfortran'
FCFLAGS='-g -O2 -fstack-protector-strong'
FFLAGS='-g -O2 -fstack-protector-strong'
FGREP='/bin/grep -F'
GREP='/bin/grep'
INSTALL_DATA='${INSTALL} -m 644'
INSTALL_INCLUDE_CONDITIONAL_FALSE=''
INSTALL_INCLUDE_CONDITIONAL_TRUE=''
INSTALL_PROGRAM='${INSTALL}'
INSTALL_SCRIPT='${INSTALL}'
INSTALL_STRIP_PROGRAM='$(install_sh) -c -s'
LD='/usr/bin/ld -m elf_x86_64'
LDFLAGS='-Wl,-z,relro -lpthread -L/usr/lib/x86_64-linux-gnu/hdf5/serial'
LIBOBJS=''
LIBS='-lhdf5 -lz -lm '
LIBTOOL='$(SHELL) $(top_builddir)/libtool'
LIPO=''
LN_S='ln -s'
LTLIBOBJS=''
MAINT='#'
MAINTAINER_MODE_FALSE=''
MAINTAINER_MODE_TRUE='#'
MAKEINFO='${SHELL}
/home/lamby/temp/cdt.20160130001950.M1VKk1na8D/hdf-eos5-5.1.15.dfsg.1/config/missing
makeinfo'
MANIFEST_TOOL=':'
MKDIR_P='/bin/mkdir -p'
NM='/usr/bin/nm -B'
NMEDIT=''
OBJDUMP='objdump'
OBJEXT='o'
OTOOL64=''
OTOOL=''
PACKAGE='hdf-eos5'
PACKAGE_BUGREPORT='[email protected]'
PACKAGE_NAME='hdf-eos5'
PACKAGE_STRING='hdf-eos5 1.8'
PACKAGE_TARNAME='hdf-eos5'
PACKAGE_URL=''
PACKAGE_VERSION='1.8'
PATH_SEPARATOR=':'
RANLIB='ranlib'
SED='/bin/sed'
SET_MAKE=''
SHELL='/bin/bash'
STRIP='strip'
SZIP_ENCODER_CONDITIONAL_FALSE=''
SZIP_ENCODER_CONDITIONAL_TRUE=''
TESTDRIVERS_CONDITIONAL_FALSE=''
TESTDRIVERS_CONDITIONAL_TRUE=''
THREADSAFE_CONDITIONAL_FALSE='#'
THREADSAFE_CONDITIONAL_TRUE=''
VERSION='1.8'
ac_ct_AR='ar'
ac_ct_CC='gcc'
ac_ct_DUMPBIN=''
ac_ct_F77=''
ac_ct_FC='gfortran'
am__EXEEXT_FALSE=''
am__EXEEXT_TRUE=''
am__fastdepCC_FALSE=''
am__fastdepCC_TRUE='#'
am__include='include'
am__isrc=''
am__leading_dot='.'
am__nodep=''
am__quote=''
am__tar='$${TAR-tar} chof - "$$tardir"'
am__untar='$${TAR-tar} xf -'
bindir='${exec_prefix}/bin'
build='x86_64-pc-linux-gnu'
build_alias='x86_64-linux-gnu'
build_cpu='x86_64'
build_os='linux-gnu'
build_vendor='pc'
datadir='${datarootdir}'
datarootdir='${prefix}/share'
docdir='${datarootdir}/doc/${PACKAGE_TARNAME}'
dvidir='${docdir}'
exec_prefix='NONE'
host='x86_64-pc-linux-gnu'
host_alias=''
host_cpu='x86_64'
host_os='linux-gnu'
host_vendor='pc'
htmldir='${docdir}'
includedir='${prefix}/include'
infodir='${prefix}/share/info'
install_sh='${SHELL}
/home/lamby/temp/cdt.20160130001950.M1VKk1na8D/hdf-eos5-5.1.15.dfsg.1/config/install-sh'
libdir='${prefix}/lib/x86_64-linux-gnu'
libexecdir='${prefix}/lib/x86_64-linux-gnu'
localedir='${datarootdir}/locale'
localstatedir='/var'
mandir='${prefix}/share/man'
mkdir_p='$(MKDIR_P)'
oldincludedir='/usr/include'
pdfdir='${docdir}'
prefix='/usr'
program_transform_name='s,x,x,'
psdir='${docdir}'
runstatedir='${localstatedir}/run'
sbindir='${exec_prefix}/sbin'
sharedstatedir='${prefix}/com'
sysconfdir='/etc'
target_alias=''
## ----------- ##
## confdefs.h. ##
## ----------- ##
/* confdefs.h */
#define PACKAGE_NAME "hdf-eos5"
#define PACKAGE_TARNAME "hdf-eos5"
#define PACKAGE_VERSION "1.8"
#define PACKAGE_STRING "hdf-eos5 1.8"
#define PACKAGE_BUGREPORT "[email protected]"
#define PACKAGE_URL ""
#define PACKAGE "hdf-eos5"
#define VERSION "1.8"
#define STDC_HEADERS 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRING_H 1
#define HAVE_MEMORY_H 1
#define HAVE_STRINGS_H 1
#define HAVE_INTTYPES_H 1
#define HAVE_STDINT_H 1
#define HAVE_UNISTD_H 1
#define HAVE_DLFCN_H 1
#define LT_OBJDIR ".libs/"
#define HAVE_LIBM 1
#define HAVE_ZLIB_H 1
#define HAVE_LIBZ 1
#define SIZEOF_INTP 8
#define HAVE_HDF5_H 1
#define HAVE_LIBHDF5 1
#define _HDFEOS5_THREADSAFE 1
#define HAVE_HDF5_SZIP_DECODER 1
#define H5_HAVE_FILTER_SZIP 1
#define HAVE_HDF5_SZIP_ENCODER 1
configure: exit 1
dh_auto_configure: ./configure --build=x86_64-linux-gnu --prefix=/usr
--includedir=${prefix}/include --mandir=${prefix}/share/man
--infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var
--disable-silent-rules --libdir=${prefix}/lib/x86_64-linux-gnu
--libexecdir=${prefix}/lib/x86_64-linux-gnu --disable-maintainer-mode
--disable-dependency-tracking --enable-shared --with-pic
--with-hdf5=/usr/include/hdf5/serial,/usr/lib/x86_64-linux-gnu/hdf5/serial
returned exit code 1
debian/rules:25: recipe for target 'override_dh_auto_configure' failed
make[1]: *** [override_dh_auto_configure] Error 255
make[1]: Leaving directory
'/home/lamby/temp/cdt.20160130001950.M1VKk1na8D/hdf-eos5-5.1.15.dfsg.1'
debian/rules:8: recipe for target 'build' failed
make: *** [build] Error 2
[..]
The full build log is attached.
Regards,
--
,''`.
: :' : Chris Lamb
`. `'` [email protected] / chris-lamb.co.uk
`-
hdf-eos5.5.1.15.dfsg.1-4.unstable.amd64.log.txt.gz
Description: Binary data
--- End Message ---
--- Begin Message ---
Source: hdf-eos5
Source-Version: 5.1.15.dfsg.1-6
We believe that the bug you reported is fixed in the latest version of
hdf-eos5, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Alastair McKinstry <[email protected]> (supplier of updated hdf-eos5 package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Fri, 05 Feb 2016 15:34:04 +0000
Source: hdf-eos5
Binary: libhe5-hdfeos0 libhe5-hdfeos-dev
Architecture: source amd64
Version: 5.1.15.dfsg.1-6
Distribution: sid
Urgency: medium
Maintainer: Alastair McKinstry <[email protected]>
Changed-By: Alastair McKinstry <[email protected]>
Description:
libhe5-hdfeos-dev - Development files for the HDF-EOS5 library
libhe5-hdfeos0 - Earth Observation System extensions to HDF5
Closes: 760279 813160
Changes:
hdf-eos5 (5.1.15.dfsg.1-6) experimental; urgency=medium
.
* Now build with szip support. Closes: #813160.
* Delete obsolete links file (replace by multiarch rules in ./rules)
Closes: #760279.
* Standards-Version: 3.9.7
* Updated watch file.
* Add Vcs-Git to repo in debian-science
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