Source: bcftools Version: 1.2-2 Severity: serious Justification: fails to build from source User: [email protected] Usertags: ftbfs X-Debbugs-Cc: [email protected]
Dear Maintainer,
bcftools fails to build from source in unstable/amd64:
[..]
cc -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong
-Wformat -Werror=format-security -g -Wall -Wc++-compat -O2
-DPLUGINPATH=\"/usr/lib/x86_64-linux-gnu/bcftools\" -DUSE_GPL -I.
-I/usr/include vcfsom.c -o vcfsom.o
vcfmerge.c:424:6: error: conflicting types for 'bcf_hdr_merge'
void bcf_hdr_merge(bcf_hdr_t *hw, const bcf_hdr_t *hr, const char
*clash_prefix, int force_samples)
^
In file included from vcfmerge.c:30:0:
/usr/include/htslib/vcf.h:407:16: note: previous declaration of
'bcf_hdr_merge' was here
bcf_hdr_t *bcf_hdr_merge(bcf_hdr_t *dst, const bcf_hdr_t *src);
^
vcfmerge.c: In function 'bcf_hdr_merge':
vcfmerge.c:427:5: warning: 'bcf_hdr_combine' is deprecated: Please use
bcf_hdr_merge instead [-Wdeprecated-declarations]
int ret = bcf_hdr_combine(hw, hr);
^
In file included from vcfmerge.c:30:0:
/usr/include/htslib/vcf.h:391:9: note: declared here
int bcf_hdr_combine(bcf_hdr_t *dst, const bcf_hdr_t *src)
HTS_DEPRECATED("Please use bcf_hdr_merge instead");
^
Makefile:90: recipe for target 'vcfmerge.o' failed
make[1]: *** [vcfmerge.o] Error 1
make[1]: *** Waiting for unfinished jobs....
make[1]: Leaving directory
'/home/lamby/temp/cdt.20160202103852.cx8O6CogYx/bcftools-1.2'
dh_auto_build: make -j9 returned exit code 2
debian/rules:15: recipe for target 'build' failed
make: *** [build] Error 2
[..]
The full build log is attached.
Regards,
--
,''`.
: :' : Chris Lamb
`. `'` [email protected] / chris-lamb.co.uk
`-
bcftools.1.2-2.unstable.amd64.log.txt.gz
Description: Binary data
