Your message dated Sat, 23 Jan 2016 04:39:24 +0000
with message-id <[email protected]>
and subject line Bug#812328: fixed in bcftools 1.2-2
has caused the Debian Bug report #812328,
regarding bcftools: fails to upgrade from 'jessie' - trying to overwrite
/usr/share/man/man1/bcftools.1.gz
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
812328: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=812328
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: bcftools
Version: 1.2-1
Severity: serious
User: [email protected]
Usertags: piuparts
Hi,
during a test with piuparts I noticed your package fails to upgrade from
'jessie'.
It installed fine in 'jessie', then the upgrade to 'sid' fails
because it tries to overwrite other packages files without declaring a
Breaks+Replaces relation.
See policy 7.6 at
https://www.debian.org/doc/debian-policy/ch-relationships.html#s-replaces
>From the attached log (scroll to the bottom...):
Selecting previously unselected package bcftools.
Preparing to unpack .../bcftools_1.2-1_amd64.deb ...
Unpacking bcftools (1.2-1) ...
dpkg: error processing archive
/var/cache/apt/archives/bcftools_1.2-1_amd64.deb (--unpack):
trying to overwrite '/usr/share/man/man1/bcftools.1.gz', which is also in
package samtools 0.1.19-1
cheers,
Andreas
samtools=0.1.19-1_bcftools=1.2-1.log.gz
Description: application/gzip
--- End Message ---
--- Begin Message ---
Source: bcftools
Source-Version: 1.2-2
We believe that the bug you reported is fixed in the latest version of
bcftools, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Afif Elghraoui <[email protected]> (supplier of updated bcftools package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Fri, 22 Jan 2016 18:52:53 -0800
Source: bcftools
Binary: bcftools
Architecture: source
Version: 1.2-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Afif Elghraoui <[email protected]>
Description:
bcftools - genomic variant calling and manipulation of VCF/BCF files
Closes: 812328
Changes:
bcftools (1.2-2) unstable; urgency=medium
.
* Fix autopkgtest dependencies
* Declare conflict with older versions of samtools (Closes: #812328)
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--- End Message ---
