Hi, Andreas, على الإثنين 7 كانون الأول 2015 01:10، كتب Andreas Tille: > > Hmmm, I have seen commit 7c93b9c0d42c415ef3296e6ee4a7d61b6fc34cb8 but I > remain with failures even on amd64. :-( > > > ... > File "../doc/tss.rst", line 211, in tss.rst > Failed example: > for almnt in sortedbamfile[ window ]: > print almnt #doctest:+ELLIPSIS +NORMALIZE_WHITESPACE > Exception raised: > Traceback (most recent call last): > File "/usr/lib/python2.7/doctest.py", line 1315, in __run > compileflags, 1) in test.globs > File "<doctest tss.rst[27]>", line 1, in <module> > for almnt in sortedbamfile[ window ]: > File > "/build/htseq-0.6.1p1/build/lib.linux-x86_64-2.7/HTSeq/__init__.py", line > 975, in __getitem__ > self.sf = pysam.AlignmentFile( self.filename, "rb" ) > AttributeError: 'module' object has no attribute 'AlignmentFile' > **********************************************************************
This error appears like you're somehow using an old version of pysam because AlignmentFile was introduced in 0.8.1. Are you sure you're not accidentally building with a Jessie chroot (where pysam is at version 0.7.7) rather than an Unstable one? [...] > > > Strange that you can not reproduce this. > I just made sure my working directory was clean and tried building again. It still works for me... regards Afif -- Afif Elghraoui | عفيف الغراوي http://afif.ghraoui.name
