Your message dated Tue, 06 Oct 2015 09:37:41 +0000 with message-id <[email protected]> and subject line Bug#800794: fixed in python-pysam 0.8.3+ds1-3 has caused the Debian Bug report #800794, regarding python-pysam: FTBFS on multiple archs due to cython error to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact [email protected] immediately.) -- 800794: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=800794 Debian Bug Tracking System Contact [email protected] with problems
--- Begin Message ---Package: python-pysam Version: 0.8.3+ds1-2 Severity: serious Justification: fails to build from source (but built successfully in the past) While rebuilding the package for the transition that adds python3.5 as a supported python3 version it FTBFS on muliple archs. Here's an example log excerpt from ppc64el: pysam/cbcf.c: At top level: pysam/cbcf.c:47536:67: error: unknown type name ‘htsFormatCategory’ static CYTHON_INLINE PyObject* __Pyx_PyInt_From_htsFormatCategory(htsFormatCategory value) { ^ pysam/cbcf.c:47562:64: error: unknown type name ‘htsExactFormat’ static CYTHON_INLINE PyObject* __Pyx_PyInt_From_htsExactFormat(htsExactFormat value) { ^ pysam/cbcf.c:47614:64: error: unknown type name ‘htsCompression’ static CYTHON_INLINE PyObject* __Pyx_PyInt_From_htsCompression(htsCompression value) { ^ error: command 'powerpc64le-linux-gnu-gcc' failed with exit status 1 E: pybuild pybuild:262: build: plugin distutils failed with: exit code=1: /usr/bin/python setup.py build dh_auto_build: pybuild --build -i python{version} -p 2.7 --dir . returned exit code 13 debian/rules:17: recipe for target 'build-arch' failed make: *** [build-arch] Error 25 It seems unrelated to python3.5. Scott K
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--- Begin Message ---Source: python-pysam Source-Version: 0.8.3+ds1-3 We believe that the bug you reported is fixed in the latest version of python-pysam, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to [email protected], and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Afif Elghraoui <[email protected]> (supplier of updated python-pysam package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing [email protected]) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Tue, 06 Oct 2015 00:57:19 -0700 Source: python-pysam Binary: python-pysam python3-pysam python-pysam-tests Architecture: source all amd64 Version: 0.8.3+ds1-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <[email protected]> Changed-By: Afif Elghraoui <[email protected]> Description: python-pysam - interface for the SAM/BAM sequence alignment and mapping format ( python-pysam-tests - interface for the SAM/BAM sequence alignment and mapping format ( python3-pysam - interface for the SAM/BAM sequence alignment and mapping format ( Closes: 800794 Changes: python-pysam (0.8.3+ds1-3) unstable; urgency=medium . * Backport upstream commit 6efb22b to permit building with Cython 0.23.x (Closes: 800794) * Revise lintian overrides. Checksums-Sha1: 5a55903a689d2b9a081fee5b034e175d74adc4bf 2387 python-pysam_0.8.3+ds1-3.dsc d5f24c716ed6bdb37f1c29b57dfd79c642077936 10448 python-pysam_0.8.3+ds1-3.debian.tar.xz 3285120839fd7e448c3f75f85db4f318c0b2f9f0 772396 python-pysam-tests_0.8.3+ds1-3_all.deb 58093637a54dc0ec8a4d35675110166f7e60a778 741132 python-pysam_0.8.3+ds1-3_amd64.deb dc64005b40449f781f91956fefb100b6733cfa39 1099826 python3-pysam_0.8.3+ds1-3_amd64.deb Checksums-Sha256: 88888814798f6c792251e205a17cb325913f7285f6c8033b65b4e857886cec15 2387 python-pysam_0.8.3+ds1-3.dsc 67da700b7d4f9b7377c222bfecf8b58caa11c750c144cc250036c6ff63e4b709 10448 python-pysam_0.8.3+ds1-3.debian.tar.xz 08f1b2603ddfad9bcfc0839e4a360a3cef236a8b3bf4f4807ba445ea19ef41f3 772396 python-pysam-tests_0.8.3+ds1-3_all.deb 5d6f850a9f5311c4db431838377c061e153d169a8977519185e17a77c5495d0c 741132 python-pysam_0.8.3+ds1-3_amd64.deb 5b5f240ed372cd3f9314d38aaeab05f8bacf72b83e79a61e4ef3f57ff489dca4 1099826 python3-pysam_0.8.3+ds1-3_amd64.deb Files: 51172e70969c8d61f8857119b15565d0 2387 python optional python-pysam_0.8.3+ds1-3.dsc 1768065882fc7c299a649b661d6e0854 10448 python optional python-pysam_0.8.3+ds1-3.debian.tar.xz 40c16375ef8b2ba76ca0ea1e496607ca 772396 python optional python-pysam-tests_0.8.3+ds1-3_all.deb 5d401d82b5670dcdf9175732c7b840ed 741132 python optional python-pysam_0.8.3+ds1-3_amd64.deb e8c88a4ae28e0339054ece871269661c 1099826 python optional python3-pysam_0.8.3+ds1-3_amd64.deb -----BEGIN PGP SIGNATURE----- Version: GnuPG v1 iQIcBAEBCAAGBQJWE4TuAAoJEM6uatOv6Cb7c30QAM9qB5RKisD/RPcNq28impMf VicpGyqUh4KqRApZZOttIB0OoBkstfcmxaFlEfcg1Y4zAkVQRq/gm8T0C3CvV8/h B1PTZwp8x07NIpvA5ij0MV8N5BI62nRlPWy4uDwRnCSU+3LDW2IwY0pHELHOHAkL 99/CCfJ1+zdJXlWxZ2B6tft7sb7ESyz+YVdJMs70O/9YURTVVab3KLwcrlVO38xh JlLX606xw29htke3+TLfIlQ5Qlmohmt3Sfj72P0bzOcFfB/Nkuba/hXBSo50ZIPP U37dvjcVd7Tzd7n/atX6uZY8R++LdHfYdnI8PagpcYQ0BAvFTLarTYip7iagKot/ wurc9OqbIBELgyP6AJBoWi/yj0VGGC8FCoT/gDd/A/jvcvg/RVh64keV410bCfuE Sn6HPm5JeMHNpSnGN2Bd0SmNOB0p3bj6cmmiiPjso7klHZ7Buy/bzD0Af4abJXEd X9TFshQnhcW0OXXLciD5VvZuVCi/XZPkWo/uw+8SMm3nZdTiDjXsGJxuAFDyMY0E XYONqKuF7OPmysy+WWlCrVIP/0bBeQ8xguQYj+gNhOiqNqtiC8+i+q/GFzdyRtUE xR8EDLJXAbGg85rZbTlHUHjblSYO/bInIMX5Dqnj+qSniVP/xNePaK6V7dvYExWO Z63OrRZlqXqpWKUi+ear =L+Pi -----END PGP SIGNATURE-----
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