Your message dated Mon, 15 Sep 2014 14:34:32 +0200 with message-id <[email protected]> and subject line Closing the bug since it builds fine has caused the Debian Bug report #759971, regarding plastimatch: FTBFS: make[3]: *** No rule to make target '/usr/lib/x86_64-linux-gnu/libhdf5.so', needed by 'bragg_curve'. Stop. to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact [email protected] immediately.) -- 759971: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=759971 Debian Bug Tracking System Contact [email protected] with problems
--- Begin Message ---Source: plastimatch Version: 1.5.16+dfsg-1 Severity: serious Tags: jessie sid User: [email protected] Usertags: qa-ftbfs-20140830 qa-ftbfs Justification: FTBFS on amd64 Hi, During a rebuild of all packages in sid, your package failed to build on amd64. Relevant part (hopefully): > make[3]: Entering directory > '/«BUILDDIR»/plastimatch-1.5.16+dfsg/obj-x86_64-linux-gnu' > /usr/bin/cmake -E cmake_progress_report > /«BUILDDIR»/plastimatch-1.5.16+dfsg/obj-x86_64-linux-gnu/CMakeFiles 8 > make[3]: *** No rule to make target '/usr/lib/x86_64-linux-gnu/libhdf5.so', > needed by 'dlib_train'. Stop. > [ 83%] Building CXX object > src/plastimatch/cli/CMakeFiles/landmark_warp.dir/landmark_warp_main.cxx.o > make[3]: *** Waiting for unfinished jobs.... > cd > /«BUILDDIR»/plastimatch-1.5.16+dfsg/obj-x86_64-linux-gnu/src/plastimatch/cli > && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -g -O2 > -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 > -O3 -DNDEBUG -fPIC > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/src/plastimatch/cli > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/obj-x86_64-linux-gnu/src/plastimatch > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/src/plastimatch/util > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/src/plastimatch/sys > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/src/plastimatch/segment > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/src/plastimatch/register/cuda > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/src/plastimatch/register > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/src/plastimatch/reconstruct/cuda > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/src/plastimatch/reconstruct > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/src/plastimatch/qt > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/src/plastimatch/opencl > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/src/plastimatch/cuda > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/src/plastimatch/dose > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/src/plastimatch/clp > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/src/plastimatch/base > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/src/plastimatch > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/obj-x86_64-linux-gnu > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/obj-x86_64-linux-gnu/ITKIOFactoryRegistration > > -I/home/steve/Packages/debian-med/trunk/packages/insighttoolkit/build-area/insighttoolkit4-4.6.0/BUILD/Modules/ThirdParty/HDF5/src > -I/usr/include/dcmtk -I/usr/include/dcmtk/oflog -I/usr/include/dcmtk/ofstd > -I/usr/include/dcmtk/dcmtls -I/usr/include/dcmtk/dcmsr > -I/usr/include/dcmtk/dcmsign -I/usr/include/dcmtk/dcmqrdb > -I/usr/include/dcmtk/dcmpstat -I/usr/include/dcmtk/dcmnet > -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/dcmjpeg > -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmimage > -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/config > -I/usr/include/x86_64-linux-gnu -I/usr/include/gdcm-2.4 > -I/usr/include/ITK-4.6 -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/libs/itk-3.20.0 > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/libs/demons_itk_insight > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/libs/demons_itk_insight/DiffeomorphicDemons > > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/libs/demons_itk_insight/FastSymmetricForces > > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/libs/demons_itk_insight/LOGDomainDemons > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/libs/nSIFT > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/libs/bstrlib-05122010 > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/libs/dlib-17.46 > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/libs/liblbfgs-1.9/include > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/libs > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/libs/ransac > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/libs/ransac/Common > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/libs/lua-5.1.4/src -o > CMakeFiles/landmark_warp.dir/landmark_warp_main.cxx.o -c > /«BUILDDIR»/plastimatch-1.5.16+dfsg/src/plastimatch/cli/landmark_warp_main.cxx > [ 84%] Building CXX object > src/plastimatch/standalone/CMakeFiles/compute_distance.dir/compute_distance.cxx.o > cd > /«BUILDDIR»/plastimatch-1.5.16+dfsg/obj-x86_64-linux-gnu/src/plastimatch/standalone > && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -g -O2 > -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 > -O3 -DNDEBUG -fPIC > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/src/plastimatch/standalone/standalone > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/src/plastimatch/standalone > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/obj-x86_64-linux-gnu/src/plastimatch > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/src/plastimatch/util > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/src/plastimatch/sys > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/src/plastimatch/segment > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/src/plastimatch/register/cuda > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/src/plastimatch/register > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/src/plastimatch/reconstruct/cuda > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/src/plastimatch/reconstruct > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/src/plastimatch/qt > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/src/plastimatch/opencl > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/src/plastimatch/cuda > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/src/plastimatch/dose > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/src/plastimatch/clp > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/src/plastimatch/cli > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/src/plastimatch/base > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/src/plastimatch > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/obj-x86_64-linux-gnu > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/obj-x86_64-linux-gnu/ITKIOFactoryRegistration > > -I/home/steve/Packages/debian-med/trunk/packages/insighttoolkit/build-area/insighttoolkit4-4.6.0/BUILD/Modules/ThirdParty/HDF5/src > -I/usr/include/dcmtk -I/usr/include/dcmtk/oflog -I/usr/include/dcmtk/ofstd > -I/usr/include/dcmtk/dcmtls -I/usr/include/dcmtk/dcmsr > -I/usr/include/dcmtk/dcmsign -I/usr/include/dcmtk/dcmqrdb > -I/usr/include/dcmtk/dcmpstat -I/usr/include/dcmtk/dcmnet > -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/dcmjpeg > -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmimage > -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/config > -I/usr/include/x86_64-linux-gnu -I/usr/include/gdcm-2.4 > -I/usr/include/ITK-4.6 -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/libs/itk-3.20.0 > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/libs/demons_itk_insight > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/libs/demons_itk_insight/DiffeomorphicDemons > > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/libs/demons_itk_insight/FastSymmetricForces > > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/libs/demons_itk_insight/LOGDomainDemons > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/libs/nSIFT > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/libs/bstrlib-05122010 > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/libs/dlib-17.46 > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/libs/liblbfgs-1.9/include > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/libs > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/libs/ransac > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/libs/ransac/Common -o > CMakeFiles/compute_distance.dir/compute_distance.cxx.o -c > /«BUILDDIR»/plastimatch-1.5.16+dfsg/src/plastimatch/standalone/compute_distance.cxx > Building CXX object > src/plastimatch/standalone/CMakeFiles/dlib_train.dir/dlib_train.cxx.o > cd > /«BUILDDIR»/plastimatch-1.5.16+dfsg/obj-x86_64-linux-gnu/src/plastimatch/standalone > && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -g -O2 > -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 > -O3 -DNDEBUG -fPIC > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/src/plastimatch/standalone/standalone > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/src/plastimatch/standalone > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/obj-x86_64-linux-gnu/src/plastimatch > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/src/plastimatch/util > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/src/plastimatch/sys > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/src/plastimatch/segment > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/src/plastimatch/register/cuda > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/src/plastimatch/register > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/src/plastimatch/reconstruct/cuda > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/src/plastimatch/reconstruct > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/src/plastimatch/qt > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/src/plastimatch/opencl > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/src/plastimatch/cuda > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/src/plastimatch/dose > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/src/plastimatch/clp > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/src/plastimatch/cli > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/src/plastimatch/base > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/src/plastimatch > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/obj-x86_64-linux-gnu > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/obj-x86_64-linux-gnu/ITKIOFactoryRegistration > > -I/home/steve/Packages/debian-med/trunk/packages/insighttoolkit/build-area/insighttoolkit4-4.6.0/BUILD/Modules/ThirdParty/HDF5/src > -I/usr/include/dcmtk -I/usr/include/dcmtk/oflog -I/usr/include/dcmtk/ofstd > -I/usr/include/dcmtk/dcmtls -I/usr/include/dcmtk/dcmsr > -I/usr/include/dcmtk/dcmsign -I/usr/include/dcmtk/dcmqrdb > -I/usr/include/dcmtk/dcmpstat -I/usr/include/dcmtk/dcmnet > -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/dcmjpeg > -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmimage > -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/config > -I/usr/include/x86_64-linux-gnu -I/usr/include/gdcm-2.4 > -I/usr/include/ITK-4.6 -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/libs/itk-3.20.0 > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/libs/demons_itk_insight > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/libs/demons_itk_insight/DiffeomorphicDemons > > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/libs/demons_itk_insight/FastSymmetricForces > > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/libs/demons_itk_insight/LOGDomainDemons > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/libs/nSIFT > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/libs/bstrlib-05122010 > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/libs/dlib-17.46 > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/libs/liblbfgs-1.9/include > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/libs > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/libs/ransac > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/libs/ransac/Common -o > CMakeFiles/dlib_train.dir/dlib_train.cxx.o -c > /«BUILDDIR»/plastimatch-1.5.16+dfsg/src/plastimatch/standalone/dlib_train.cxx > /usr/bin/cmake -E cmake_progress_report > /«BUILDDIR»/plastimatch-1.5.16+dfsg/obj-x86_64-linux-gnu/CMakeFiles > make[3]: *** No rule to make target '/usr/lib/x86_64-linux-gnu/libhdf5.so', > needed by 'bragg_curve'. Stop. > make[3]: *** Waiting for unfinished jobs.... > [ 84%] Building CXX object > src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/bragg_curve_opts.cxx.o > cd > /«BUILDDIR»/plastimatch-1.5.16+dfsg/obj-x86_64-linux-gnu/src/plastimatch/standalone > && /usr/bin/c++ -DITK_IO_FACTORY_REGISTER_MANAGER -g -O2 > -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 > -O3 -DNDEBUG -fPIC > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/src/plastimatch/standalone/standalone > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/src/plastimatch/standalone > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/obj-x86_64-linux-gnu/src/plastimatch > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/src/plastimatch/util > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/src/plastimatch/sys > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/src/plastimatch/segment > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/src/plastimatch/register/cuda > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/src/plastimatch/register > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/src/plastimatch/reconstruct/cuda > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/src/plastimatch/reconstruct > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/src/plastimatch/qt > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/src/plastimatch/opencl > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/src/plastimatch/cuda > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/src/plastimatch/dose > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/src/plastimatch/clp > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/src/plastimatch/cli > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/src/plastimatch/base > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/src/plastimatch > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/obj-x86_64-linux-gnu > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/obj-x86_64-linux-gnu/ITKIOFactoryRegistration > > -I/home/steve/Packages/debian-med/trunk/packages/insighttoolkit/build-area/insighttoolkit4-4.6.0/BUILD/Modules/ThirdParty/HDF5/src > -I/usr/include/dcmtk -I/usr/include/dcmtk/oflog -I/usr/include/dcmtk/ofstd > -I/usr/include/dcmtk/dcmtls -I/usr/include/dcmtk/dcmsr > -I/usr/include/dcmtk/dcmsign -I/usr/include/dcmtk/dcmqrdb > -I/usr/include/dcmtk/dcmpstat -I/usr/include/dcmtk/dcmnet > -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/dcmjpeg > -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmimage > -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/config > -I/usr/include/x86_64-linux-gnu -I/usr/include/gdcm-2.4 > -I/usr/include/ITK-4.6 -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/libs/itk-3.20.0 > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/libs/demons_itk_insight > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/libs/demons_itk_insight/DiffeomorphicDemons > > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/libs/demons_itk_insight/FastSymmetricForces > > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/libs/demons_itk_insight/LOGDomainDemons > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/libs/nSIFT > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/libs/bstrlib-05122010 > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/libs/dlib-17.46 > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/libs/liblbfgs-1.9/include > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/libs > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/libs/ransac > -I/«BUILDDIR»/plastimatch-1.5.16+dfsg/libs/ransac/Common -o > CMakeFiles/bragg_curve.dir/bragg_curve_opts.cxx.o -c > /«BUILDDIR»/plastimatch-1.5.16+dfsg/src/plastimatch/standalone/bragg_curve_opts.cxx > make[3]: Leaving directory > '/«BUILDDIR»/plastimatch-1.5.16+dfsg/obj-x86_64-linux-gnu' > make[2]: *** [src/plastimatch/standalone/CMakeFiles/bragg_curve.dir/all] > Error 2 The full build log is available from: http://aws-logs.debian.net/ftbfs-logs/2014/08/30/plastimatch_1.5.16+dfsg-1_unstable.log A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! About the archive rebuild: The rebuild was done on EC2 VM instances from Amazon Web Services, using a clean, minimal and up-to-date chroot. Every failed build was retried once to eliminate random failures. The build was done with DEB_BUILD_OPTIONS="parallel=4", so if your packaging tries to support this, it might be a good idea to explore whether this might be the cause of the failure.
--- End Message ---
--- Begin Message ---The problem seems to have been caused by libhdf5 transition and is solved now. I tested the build and it worked fine thus closing the bug. Kind regards Andreas. -- http://fam-tille.de
--- End Message ---
