Your message dated Sun, 14 Sep 2014 15:21:35 +0000
with message-id <[email protected]>
and subject line Bug#759860: fixed in pymol 1.7.2.1-1
has caused the Debian Bug report #759860,
regarding pymol: FTBFS:
contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp:1986:31: error: format
not a string literal and no format arguments [-Werror=format-security]
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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--
759860: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=759860
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: pymol
Version: 1.7.1.3-1
Severity: serious
Tags: jessie sid
User: [email protected]
Usertags: qa-ftbfs-20140830 qa-ftbfs
Justification: FTBFS on amd64
Hi,
During a rebuild of all packages in sid, your package failed to build on
amd64.
Relevant part (hopefully):
> x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall
> -Wstrict-prototypes -fno-strict-aliasing -D_FORTIFY_SOURCE=2 -g
> -fstack-protector-strong -Wformat -Werror=format-security -fPIC
> -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS
> -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS
> -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS
> -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3
> -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt
> -Ibuild/generated -Icontrib/uiuc/plugins/include
> -Icontrib/uiuc/plugins/molfile_plugin/src
> -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include
> -I/usr/include/freetype2 -I/usr/include/python2.7 -c
> contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp -o
> build/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.o
> -ffast-math -funroll-loops -O3 -fcommon
> cc1plus: warning: command line option '-Wstrict-prototypes' is valid for
> C/ObjC but not for C++
> contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp: In function 'int
> {anonymous}::write_structure(void*, int, const molfile_atom_t*)':
> contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp:1883:9: warning:
> unused variable 'last_ctnumber' [-Wunused-variable]
> int last_ctnumber = -1;
> ^
> contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp: In function 'int
> {anonymous}::write_timestep(void*, const molfile_timestep_t*)':
> contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp:1986:31: error:
> format not a string literal and no format arguments [-Werror=format-security]
> fprintf(stderr, e.what());
> ^
> cc1plus: some warnings being treated as errors
> error: command 'x86_64-linux-gnu-gcc' failed with exit status 1
> dh_auto_build: python setup.py build --force returned exit code 1
> make[1]: *** [override_dh_auto_build] Error 1
The full build log is available from:
http://aws-logs.debian.net/ftbfs-logs/2014/08/30/pymol_1.7.1.3-1_unstable.log
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
About the archive rebuild: The rebuild was done on EC2 VM instances from
Amazon Web Services, using a clean, minimal and up-to-date chroot. Every
failed build was retried once to eliminate random failures. The build
was done with DEB_BUILD_OPTIONS="parallel=4", so if your packaging tries
to support this, it might be a good idea to explore whether this might
be the cause of the failure.
--- End Message ---
--- Begin Message ---
Source: pymol
Source-Version: 1.7.2.1-1
We believe that the bug you reported is fixed in the latest version of
pymol, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Michael Banck <[email protected]> (supplier of updated pymol package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Format: 1.8
Date: Sun, 14 Sep 2014 16:35:14 +0200
Source: pymol
Binary: pymol
Architecture: source amd64
Version: 1.7.2.1-1
Distribution: unstable
Urgency: low
Maintainer: Debichem Team <[email protected]>
Changed-By: Michael Banck <[email protected]>
Description:
pymol - Molecular Graphics System
Closes: 759860
Changes:
pymol (1.7.2.1-1) unstable; urgency=low
.
* New upstream point release.
* debian/patches/31_fix_format-security.patch: New patch, fixes FTBFS bug
with -Werror=format-security (closes: #759860).
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