Your message dated Fri, 01 Aug 2014 12:35:33 +0000
with message-id <[email protected]>
and subject line Bug#741288: fixed in seqan 1.4.1+dfsg-1
has caused the Debian Bug report #741288,
regarding seqan: FTBFS on many buildds due to RAM exhaustion
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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--
741288: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=741288
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: seqan
Version: 1.4.1-3
Severity: serious
Justification: FTBFS
Hi,
it seems your package is eating too much RAM for breakfast:
| cd /«PKGBUILDDIR»/obj-arm-linux-gnueabihf/core/apps/pair_align &&
/usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1
-D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -g -O2 --param=ssp-buffer-size=4
-Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -W -Wall -Wno-long-long
-fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros
-I/«PKGBUILDDIR»/core/include -o CMakeFiles/pair_align.dir/pair_align.cpp.o
-c /«PKGBUILDDIR»/core/apps/pair_align/pair_align.cpp
| virtual memory exhausted: Cannot allocate memory
| make[4]: ***
[core/apps/pair_align/CMakeFiles/pair_align.dir/pair_align.cpp.o] Error 1
Only amd64, powerpc, and s390x builds are in the archive by now:
https://buildd.debian.org/status/package.php?p=seqan&suite=sid
(FWIW, bowtie is missing builds accordingly:
https://buildd.debian.org/status/package.php?p=bowtie&suite=sid
)
Mraw,
KiBi.
--- End Message ---
--- Begin Message ---
Source: seqan
Source-Version: 1.4.1+dfsg-1
We believe that the bug you reported is fixed in the latest version of
seqan, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <[email protected]> (supplier of updated seqan package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Thu, 31 Jul 2014 21:18:43 +0200
Source: seqan
Binary: seqan-apps seqan-dev
Architecture: source amd64 all
Version: 1.4.1+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Andreas Tille <[email protected]>
Description:
seqan-apps - C++ library for the analysis of biological sequences
seqan-dev - C++ library for the analysis of biological sequences (development
Closes: 741288
Changes:
seqan (1.4.1+dfsg-1) unstable; urgency=medium
.
* Fix FTBFS on many buildds due to RAM exhaustion (thanks to
Dejan Latinovic <[email protected]> for the patch)
Closes: #741288
* debian/copyright (watch+rules): Remove compressed and unused
JS files from upstream source
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seqan_1.4.1+dfsg.orig.tar.xz
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seqan_1.4.1+dfsg-1.debian.tar.xz
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