Hi Ivo, ping? Any idea how we could proceed here?
Kind regards Andreas. On Mon, May 05, 2014 at 03:14:10PM +0200, Andreas Tille wrote: > Hi Ivo, > > please always either keep the bug report we are working on or at least > the maintainers list in CC to keep others informed that we are working > on the issue. > > On Mon, May 05, 2014 at 01:07:26PM +0200, Ivo Maintz wrote: > > Hi Andreas, > > > > Andreas Tille <ti...@debian.org> schrieb : > > > > > > > However, I just realised that version 5.10.0 is out and this does > > > > > not contain prettify.js any more. Would you be able to adapt the > > > > > patches and we try again with this version? > > > > > > > > Is done; one issue: get-orig-source don't exclude docs/src/prettify > > > > (it is still included in the main source), but it is still listed in > > > > debian/copyright. > > > > > > This is what I thought in the first place. However, lintian seems to > > > try to tell us something else. The file is not even in upstream > > > tarball any more but I have no idea what lintian tries to express. > > > If I were you I would ask for help on debian-mentors@l.d.o for help > > > since I have no good idea what to do. > > > > > > It works now. Simple solution: the path to prettify had changed... > > Would you double-check it? > > Sorry, I can't help myself but I do not manage to build. I have commited > some slight change that should deal with xz compressed tarballs which > would be pretty useful in this case. However, even if I work with a > *.gz tarball the package does not build and stumbles after the clean > target. I have attached a build log and the diff that dpkg-source has > found. I keep on beeing sceptical about this strange way to build the > package - at least for me it only works not reliable. :-( > > Kind regards > > Andreas. > > -- > http://fam-tille.de > dpkg-checkbuilddeps: Unmet build dependencies: swig (>= 2) libperl-dev > octave-pkg-dev mono-devel mono-gmcs cli-common-dev cli-runtime > W: Unmet build-dependency in source > dpkg-buildpackage: source package libsbml > dpkg-buildpackage: source version 5.10.0+dfsg-1 > dpkg-buildpackage: source distribution unstable > dpkg-buildpackage: source changed by Andreas Tille <ti...@debian.org> > dpkg-source -i.git -I.git --before-build libSBML-5.10.0-Source > dpkg-checkbuilddeps: Unmet build dependencies: swig (>= 2) libperl-dev > octave-pkg-dev mono-devel mono-gmcs cli-common-dev cli-runtime > dpkg-buildpackage: warning: build dependencies/conflicts unsatisfied; aborting > dpkg-buildpackage: warning: (Use -d flag to override.) > dpkg-buildpackage: warning: this is currently a non-fatal warning with -S, > but will probably become fatal in the future > fakeroot debian/rules clean > dh clean --with-python2 --dbg-package=libsbml5-dbg > dh_testdir -O--with-python2 -O--dbg-package=libsbml5-dbg > debian/rules override_dh_auto_clean > make[1]: Entering directory > `/home/andreas/debian-maintain/repack/libsmbl5/libSBML-5.10.0-Source' > ### the clean target of the libsbml makefile is highly b0rken ### > ### the switch to cmake didn't result in great approvements ### > ### still inline changes of files ### > ### very ugly ### > rm -rf .debs config docs examples macosx src config.guess config.sub build > find -maxdepth 1 -type f -delete > dh_clean > if [ -e ../libsbml_5.10.0+dfsg.orig.tar.xz ] ; then COMP=xz ; else COMP=gz ; > fi ; \ > tar --no-same-owner -xaf ../libsbml_5.10.0+dfsg.orig.tar.${COMP} > --strip-components=1 > make[1]: Leaving directory > `/home/andreas/debian-maintain/repack/libsmbl5/libSBML-5.10.0-Source' > dh_clean -O--with-python2 -O--dbg-package=libsbml5-dbg > dpkg-source -i.git -I.git -b libSBML-5.10.0-Source > dpkg-source: info: using source format `3.0 (quilt)' > dpkg-source: info: building libsbml using existing > ./libsbml_5.10.0+dfsg.orig.tar.gz > dpkg-source: info: local changes detected, the modified files are: > libSBML-5.10.0-Source/OLD_NEWS.txt > libSBML-5.10.0-Source/config/makefile-common-actions.mk > libSBML-5.10.0-Source/docs/CMakeLists.txt > libSBML-5.10.0-Source/docs/src/libsbml-accessing.html > libSBML-5.10.0-Source/src/bindings/csharp/csdoc.i > libSBML-5.10.0-Source/src/bindings/csharp/csharp-files-win/Reaction.cs > libSBML-5.10.0-Source/src/bindings/csharp/csharp-files-win/SBMLError.cs > libSBML-5.10.0-Source/src/bindings/csharp/csharp-files-win/SBMLReader.cs > libSBML-5.10.0-Source/src/bindings/csharp/csharp-files-win/SBase.cs > libSBML-5.10.0-Source/src/bindings/csharp/csharp-files/Reaction.cs > libSBML-5.10.0-Source/src/bindings/csharp/csharp-files/SBMLError.cs > libSBML-5.10.0-Source/src/bindings/csharp/csharp-files/SBMLReader.cs > libSBML-5.10.0-Source/src/bindings/csharp/csharp-files/SBase.cs > > libSBML-5.10.0-Source/src/bindings/java/java-files/org/sbml/libsbml/Reaction.java > > libSBML-5.10.0-Source/src/bindings/java/java-files/org/sbml/libsbml/SBMLError.java > > libSBML-5.10.0-Source/src/bindings/java/java-files/org/sbml/libsbml/SBMLReader.java > > libSBML-5.10.0-Source/src/bindings/java/java-files/org/sbml/libsbml/SBase.java > libSBML-5.10.0-Source/src/bindings/java/javadoc.i > libSBML-5.10.0-Source/src/bindings/matlab/FindMatlab.cmake > libSBML-5.10.0-Source/src/bindings/matlab/Makefile.in > libSBML-5.10.0-Source/src/bindings/matlab/mexopts-R2009-R2010.sh > libSBML-5.10.0-Source/src/bindings/perl/LibSBML.pm > libSBML-5.10.0-Source/src/bindings/perl/LibSBML.pod > libSBML-5.10.0-Source/src/bindings/perl/Makefile.in > libSBML-5.10.0-Source/src/bindings/python/libsbml-doxygen.py > libSBML-5.10.0-Source/src/bindings/python/libsbml.py > libSBML-5.10.0-Source/src/bindings/python/libsbml_wrap.cpp > libSBML-5.10.0-Source/src/bindings/python/local.i > libSBML-5.10.0-Source/src/bindings/python/pydoc-doxygen.i > libSBML-5.10.0-Source/src/bindings/python/pydoc-normal.i > libSBML-5.10.0-Source/src/sbml/Reaction.h > libSBML-5.10.0-Source/src/sbml/SBMLReader.cpp > libSBML-5.10.0-Source/src/sbml/SBMLReader.h > libSBML-5.10.0-Source/src/sbml/SBase.h > libSBML-5.10.0-Source/src/sbml/common/common-documentation.h > libSBML-5.10.0-Source/src/sbml/packages/comp/validator/CompSBMLError.h > libSBML-5.10.0-Source/src/sbml/packages/comp/validator/CompSBMLErrorTable.h > dpkg-source: error: aborting due to unexpected upstream changes, see > /tmp/libsbml_5.10.0+dfsg-1.diff.KtELfa > dpkg-source: info: you can integrate the local changes with dpkg-source > --commit > dpkg-buildpackage: error: dpkg-source -i.git -I.git -b libSBML-5.10.0-Source > gave error exit status 2 > _______________________________________________ > Debian-med-packaging mailing list > debian-med-packag...@lists.alioth.debian.org > http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-packaging -- http://fam-tille.de -- To UNSUBSCRIBE, email to debian-bugs-rc-requ...@lists.debian.org with a subject of "unsubscribe". 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