Your message dated Mon, 02 Dec 2013 18:33:22 +0000
with message-id <[email protected]>
and subject line Bug#729652: fixed in dialign-t 1.0.2-4
has caused the Debian Bug report #729652,
regarding dialign-t: FTBFS on all arches except on Intl-like
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
729652: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=729652
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: dialign-t
Version: 1.0.2-3
Severity: normal
Tags: patch
Hi,
dialign-t FTBFS on all arches except on i386 and amd64 like this:
gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat
-Werror=format-security -O3 -funroll-loops -mfpmath=sse -msse -mmmx -c -o
museq.o museq.c
cc1: error: unrecognized command line option '-mfpmath=sse'
cc1: error: unrecognized command line option '-msse'
cc1: error: unrecognized command line option '-mmmx'
make[1]: *** [museq.o] Error 1
In debian/patches/prevent_enforcing_arch.patch you are doing like this:
--- dialign-t-1.0.2.orig/source/Makefile 2008-12-06 13:10:05.000000000
+0100
+++ dialign-t-1.0.2/source/Makefile 2013-11-15 11:32:19.875489844 +0100
@@ -8,7 +8,7 @@
# THIS IS FOR THE OPTIMIZED ONE^M
#CPPFLAGS=-g ^M
#CPPFLAGS=-O3 -march=i686 -funroll-loops^M
-CPPFLAGS=-O3 -funroll-loops -march=i686 -mfpmath=sse -msse -mmmx^M
+CPPFLAGS=-O3 -funroll-loops -mfpmath=sse -msse -mmmx^M
#CPPFLAGS=-march=athlon-mp -g -O0 -Wall -D_USE_XOPEN -D__unix__^M
^M
OBJ_DIR=.^M
The above error can be fixed by further removing "-mfpmath=sse -msse -mmmx"
from the Makefile. You can still optimize on MMX platforms via Makefile
conditionals, if you want.
Roland
-- System Information:
Debian Release: 7.0
APT prefers unreleased
APT policy: (500, 'unreleased'), (500, 'unstable')
Architecture: powerpcspe (ppc)
Kernel: Linux 3.9.0-dirty (SMP w/2 CPU cores)
Locale: LANG=en_US.utf8, LC_CTYPE=en_US.utf8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
--- End Message ---
--- Begin Message ---
Source: dialign-t
Source-Version: 1.0.2-4
We believe that the bug you reported is fixed in the latest version of
dialign-t, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <[email protected]> (supplier of updated dialign-t package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Format: 1.8
Date: Mon, 02 Dec 2013 19:10:33 +0100
Source: dialign-t
Binary: dialign-tx dialign-tx-data
Architecture: source amd64 all
Version: 1.0.2-4
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Andreas Tille <[email protected]>
Description:
dialign-tx - Segment-based multiple sequence alignment
dialign-tx-data - Segment-based multiple sequence alignment (data files)
Closes: 729652
Changes:
dialign-t (1.0.2-4) unstable; urgency=low
.
* Set conditional sse optimising flags
Closes: #729652
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