Source: cdk
Version: 1:1.2.10-4
Severity: serious
Tags: jessie sid
User: [email protected]
Usertags: qa-ftbfs-20130922 qa-ftbfs
Justification: FTBFS on amd64
Hi,
During a rebuild of all packages in sid, your package failed to build on
amd64.
Relevant part (hopefully):
> compile-module:
> [echo] Compiling classes for CDK's extra module from src/main...
> [echo] Datafiles defined: true
> [echo] Extra files defined: ${module.extrafiles.present}
> [echo] CDK dependencies defined: true
> [echo] Library dependencies defined: true
> [echo] Developer Library dependencies defined:
> ${module.devellibdepends.present}
> [echo] Autogenerated files specified: ${module.autogenerated.present}
> [mkdir] Created dir: /«PKGBUILDDIR»/build/src/extra
> [mkdir] Created dir: /«PKGBUILDDIR»/build/extra
> [copy] Copying 79 files to /«PKGBUILDDIR»/build/src/extra
> [javac] Compiling 79 source files to /«PKGBUILDDIR»/build/extra
> [javac] warning: [options] bootstrap class path not set in conjunction
> with -source 1.5
> [javac]
> /«PKGBUILDDIR»/build/src/extra/org/openscience/cdk/geometry/alignment/KabschAlignment.java:34:
> error: package Jama does not exist
> [javac] import Jama.EigenvalueDecomposition;
> [javac] ^
> [javac]
> /«PKGBUILDDIR»/build/src/extra/org/openscience/cdk/geometry/alignment/KabschAlignment.java:35:
> error: package Jama does not exist
> [javac] import Jama.Matrix;
> [javac] ^
> [javac]
> /«PKGBUILDDIR»/build/src/extra/org/openscience/cdk/geometry/alignment/KabschAlignment.java:290:
> error: cannot find symbol
> [javac] Matrix tmp;
> [javac] ^
> [javac] symbol: class Matrix
> [javac] location: class KabschAlignment
> [javac]
> /«PKGBUILDDIR»/build/src/extra/org/openscience/cdk/geometry/alignment/KabschAlignment.java:329:
> error: cannot find symbol
> [javac] tmp = new Matrix(tR);
> [javac] ^
> [javac] symbol: class Matrix
> [javac] location: class KabschAlignment
> [javac]
> /«PKGBUILDDIR»/build/src/extra/org/openscience/cdk/geometry/alignment/KabschAlignment.java:335:
> error: cannot find symbol
> [javac] Matrix jamaR = new Matrix(R);
> [javac] ^
> [javac] symbol: class Matrix
> [javac] location: class KabschAlignment
> [javac]
> /«PKGBUILDDIR»/build/src/extra/org/openscience/cdk/geometry/alignment/KabschAlignment.java:335:
> error: cannot find symbol
> [javac] Matrix jamaR = new Matrix(R);
> [javac] ^
> [javac] symbol: class Matrix
> [javac] location: class KabschAlignment
> [javac]
> /«PKGBUILDDIR»/build/src/extra/org/openscience/cdk/geometry/alignment/KabschAlignment.java:340:
> error: cannot find symbol
> [javac] Matrix jamaRtR = new Matrix(RtR);
> [javac] ^
> [javac] symbol: class Matrix
> [javac] location: class KabschAlignment
> [javac]
> /«PKGBUILDDIR»/build/src/extra/org/openscience/cdk/geometry/alignment/KabschAlignment.java:340:
> error: cannot find symbol
> [javac] Matrix jamaRtR = new Matrix(RtR);
> [javac] ^
> [javac] symbol: class Matrix
> [javac] location: class KabschAlignment
> [javac]
> /«PKGBUILDDIR»/build/src/extra/org/openscience/cdk/geometry/alignment/KabschAlignment.java:341:
> error: cannot find symbol
> [javac] EigenvalueDecomposition ed = jamaRtR.eig();
> [javac] ^
> [javac] symbol: class EigenvalueDecomposition
> [javac] location: class KabschAlignment
> [javac]
> /«PKGBUILDDIR»/build/src/extra/org/openscience/cdk/validate/BasicValidator.java:321:
> warning: [deprecation] getBondOrderSum(IAtom) in AtomContainer has been
> deprecated
> [javac] int bos = (int)molecule.getBondOrderSum(atom);
> [javac] ^
> [javac] Note: Some input files use unchecked or unsafe operations.
> [javac] Note: Recompile with -Xlint:unchecked for details.
> [javac] 9 errors
> [javac] 2 warnings
>
> BUILD FAILED
> /«PKGBUILDDIR»/build.xml:529: The following error occurred while executing
> this line:
> /«PKGBUILDDIR»/build.xml:367: Compile failed; see the compiler error output
> for details.
>
> Total time: 41 seconds
> make: *** [debian/stamp-ant-build] Error 1
The full build log is available from:
http://aws-logs.debian.net/ftbfs-logs/2013/09/22/cdk_1.2.10-4_unstable.log
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
About the archive rebuild: The rebuild was done on EC2 VM instances from
Amazon Web Services, using a clean, minimal and up-to-date chroot. Every
failed build was retried once to eliminate random failures.
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