Your message dated Sun, 11 Aug 2013 21:19:01 +0000
with message-id <[email protected]>
and subject line Bug#718001: fixed in gromacs 4.6.3-2
has caused the Debian Bug report #718001,
regarding gromacs-mpich, gromacs-openmpi: fails to upgrade from wheezy - trying
to overwrite /usr/lib/libgmxpreprocess_mpi_d.mpich.so
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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--
718001: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=718001
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: gromacs-mpich,gromacs-openmpi
Version: 4.6.3-1
Severity: serious
User: [email protected]
Usertags: piuparts
Hi,
during a test with piuparts I noticed your package fails to upgrade from
'wheezy'.
It installed fine in 'wheezy', then the upgrade to 'jessie' fails
because it tries to overwrite other packages files without declaring a
Breaks+Replaces relation.
See policy 7.6 at
http://www.debian.org/doc/debian-policy/ch-relationships.html#s-replaces
>From the attached log (scroll to the bottom...):
Selecting previously unselected package gromacs-mpich.
Unpacking gromacs-mpich (from .../gromacs-mpich_4.6.3-1_amd64.deb) ...
dpkg: error processing
/var/cache/apt/archives/gromacs-mpich_4.6.3-1_amd64.deb (--unpack):
trying to overwrite '/usr/lib/libgmxpreprocess_mpi_d.mpich.so', which is
also in package gromacs-dev 4.5.5-2
Errors were encountered while processing:
/var/cache/apt/archives/gromacs-mpich_4.6.3-1_amd64.deb
Selecting previously unselected package gromacs-openmpi.
Unpacking gromacs-openmpi (from .../gromacs-openmpi_4.6.3-1_amd64.deb) ...
dpkg: error processing
/var/cache/apt/archives/gromacs-openmpi_4.6.3-1_amd64.deb (--unpack):
trying to overwrite '/usr/lib/libgmxpreprocess_mpi_d.openmpi.so', which is
also in package gromacs-dev 4.5.5-2
Errors were encountered while processing:
/var/cache/apt/archives/gromacs-openmpi_4.6.3-1_amd64.deb
cheers,
Andreas
gromacs-dev=4.5.5-2_gromacs-mpich=4.6.3-1.log.gz
Description: GNU Zip compressed data
--- End Message ---
--- Begin Message ---
Source: gromacs
Source-Version: 4.6.3-2
We believe that the bug you reported is fixed in the latest version of
gromacs, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Nicholas Breen <[email protected]> (supplier of updated gromacs package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Sun, 11 Aug 2013 13:05:19 -0700
Source: gromacs
Binary: gromacs gromacs-data gromacs-dev gromacs-mpich gromacs-openmpi
Architecture: source all amd64
Version: 4.6.3-2
Distribution: unstable
Urgency: low
Maintainer: Debichem Team <[email protected]>
Changed-By: Nicholas Breen <[email protected]>
Description:
gromacs - Molecular dynamics simulator, with building and analysis tools
gromacs-data - GROMACS molecular dynamics sim, data and documentation
gromacs-dev - GROMACS molecular dynamics sim, development kit
gromacs-mpich - Molecular dynamics sim, binaries for MPICH parallelization
gromacs-openmpi - Molecular dynamics sim, binaries for OpenMPI parallelization
Closes: 718001
Changes:
gromacs (4.6.3-2) unstable; urgency=low
.
* control:
- Add B-Ds for external BLAS/LAPACK libraries.
- Have -dev Replaces/Breaks earlier versions of -openmpi/-mpich
to handle file move. (Closes: #718001)
- For gromacs, remove Conflicts with a long-obsolete (before squeeze)
version of radiance, and add Suggests on pymol for visualization.
* rules: Specify verbose output from CMake.
Checksums-Sha1:
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bb0876aef0c80a5ef32014a14cac38fbfb7ec73b 31248 gromacs_4.6.3-2.debian.tar.gz
9aa2d73619b28361ccdb0857f7a8dd536065ebad 1030060 gromacs-data_4.6.3-2_all.deb
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gromacs-mpich_4.6.3-2_amd64.deb
422048952e6b7a9c3579985a60c1657362013105 7302344
gromacs-openmpi_4.6.3-2_amd64.deb
Checksums-Sha256:
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gromacs_4.6.3-2.dsc
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gromacs_4.6.3-2.debian.tar.gz
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gromacs_4.6.3-2_amd64.deb
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gromacs-dev_4.6.3-2_amd64.deb
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gromacs-openmpi_4.6.3-2_amd64.deb
Files:
12782da3afb94acff7ec32016a5cfab9 2335 science extra gromacs_4.6.3-2.dsc
153ee4abca2f399c152e00d72bddb889 31248 science extra
gromacs_4.6.3-2.debian.tar.gz
5d07ee654bd4e033ba16f77f83e8efb1 1030060 science extra
gromacs-data_4.6.3-2_all.deb
aafea78f0dd01c68a01a6a8ac363f6d8 9733890 science extra
gromacs_4.6.3-2_amd64.deb
e34ddbe16a6d525cbd7b710e32df163e 252430 devel extra
gromacs-dev_4.6.3-2_amd64.deb
02915cee0bee957193e7b7d72eba6ab1 7300136 science extra
gromacs-mpich_4.6.3-2_amd64.deb
f35025ffb7b5a85cc22d324ce360d7ae 7302344 science extra
gromacs-openmpi_4.6.3-2_amd64.deb
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