Your message dated Fri, 24 May 2013 17:21:47 +0000
with message-id <[email protected]>
and subject line Bug#684162: fixed in neobio 0.0.20030929-1.1
has caused the Debian Bug report #684162,
regarding neobio: Transition package to default java implementation
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
684162: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=684162
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: neobio
Version: 0.0.20030929-1
Severity: normal
Tags: patch
User: [email protected]
Usertags: origin-ubuntu quantal ubuntu-patch openjdk-7-transition
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Dear Maintainer,
In Ubuntu, the attached patch was applied to achieve the following:
* Transition package to default java implementation:
- d/control: BD on default-jdk (>= 1:1.6), switch runtime dependency
to default-jre | java6-runtime.
- d/rules: Specify source/target = 1.5 to ensure that backwards
compatible bytecode is built.
Ubuntu quantal is transitioning default java from openjdk-6 to openjdk-7. This
patch eases the transition and ensures backwards compatible bytecode is built.
Note that this is not a release goal for wheezy.
Thanks for considering the patch.
- -- System Information:
Debian Release: wheezy/sid
APT prefers quantal-updates
APT policy: (500, 'quantal-updates'), (500, 'quantal-security'), (500,
'quantal')
Architecture: amd64 (x86_64)
Foreign Architectures: i386
Kernel: Linux 3.5.0-8-generic (SMP w/8 CPU cores)
Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
-----BEGIN PGP SIGNATURE-----
Version: GnuPG v1.4.11 (GNU/Linux)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=blaS
-----END PGP SIGNATURE-----
diff -Nru neobio-0.0.20030929/debian/changelog neobio-0.0.20030929/debian/changelog
diff -Nru neobio-0.0.20030929/debian/control neobio-0.0.20030929/debian/control
--- neobio-0.0.20030929/debian/control 2012-05-30 10:12:25.000000000 +0100
+++ neobio-0.0.20030929/debian/control 2012-08-07 14:29:00.000000000 +0100
@@ -3,7 +3,7 @@
Priority: extra
Maintainer: Debian Med Packaging Team <[email protected]>
Uploaders: Christoph Gille <[email protected]>
-Build-Depends: debhelper (>= 8), openjdk-6-jdk | sun-java6-jdk, javahelper (>=0.25)
+Build-Depends: debhelper (>= 8), default-jdk (>= 1:1.6), javahelper (>=0.25)
Standards-Version: 3.9.3
Homepage: http://neobio.sourceforge.net/
Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/neobio/trunk/
@@ -11,7 +11,7 @@
Package: neobio
Architecture: all
-Depends: openjdk-6-jre | sun-java6-jre, java-wrappers, ${misc:Depends}, ${java:Depends}
+Depends: default-jre | java6-runtime, java-wrappers, ${misc:Depends}, ${java:Depends}
Suggests: strap
Enhances: strap
Description: pairwise sequence alignments
diff -Nru neobio-0.0.20030929/debian/rules neobio-0.0.20030929/debian/rules
--- neobio-0.0.20030929/debian/rules 2012-05-30 10:12:11.000000000 +0100
+++ neobio-0.0.20030929/debian/rules 2012-08-07 14:26:12.000000000 +0100
@@ -12,7 +12,7 @@
override_dh_auto_build:
mkdir -p classes
- javac -cp src -d classes $(shell find src -name "*.java")
+ javac -cp src -source 1.5 -target 1.5 -d classes $(shell find src -name "*.java")
jar -cf neobio-$(VERSION).jar -C classes neobio -C bin neobio/gui/icons
override_dh_clean:
--- End Message ---
--- Begin Message ---
Source: neobio
Source-Version: 0.0.20030929-1.1
We believe that the bug you reported is fixed in the latest version of
neobio, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
gregor herrmann <[email protected]> (supplier of updated neobio package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Wed, 22 May 2013 18:53:39 +0200
Source: neobio
Binary: neobio
Architecture: source all
Version: 0.0.20030929-1.1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: gregor herrmann <[email protected]>
Description:
neobio - computes alignments of amino acid and nucleotide sequences
Closes: 684162
Changes:
neobio (0.0.20030929-1.1) unstable; urgency=low
.
[ Andreas Tille ]
* Enhanced short description
.
[ gregor herrmann ]
* Non-maintainer upload.
* Fix "Transition package to default java implementation":
apply patch from Ubuntu / James Page:
.
* Transition package to default java implementation:
- d/control: BD on default-jdk (>= 1:1.6), switch runtime dependency
to default-jre | java6-runtime.
- d/rules: Specify source/target = 1.5 to ensure that backwards
compatible bytecode is built.
.
(Closes: #684162)
Checksums-Sha1:
8127eb1675ac2acc8fb1cc4c4a5f45b60bb9f0a0 2065 neobio_0.0.20030929-1.1.dsc
1220d31e5c261e703e649be6bc14f54470e61ec2 3858
neobio_0.0.20030929-1.1.debian.tar.gz
6d05c7c76fe0e7fd93e0fd633bc3bc1fbf0b319b 443450 neobio_0.0.20030929-1.1_all.deb
Checksums-Sha256:
5ec61ca6ae54693e9c72285307333d5c68d605e9657d71d9707a386dbcb527e7 2065
neobio_0.0.20030929-1.1.dsc
c66f4cd82aafe6cf9c3e3c48061288497eafba741c12d30a2a59b7150d542498 3858
neobio_0.0.20030929-1.1.debian.tar.gz
4bbc10d549d4513072ad01dd5eaa15afde28037a673cdeae9c89354c76894a9f 443450
neobio_0.0.20030929-1.1_all.deb
Files:
a85ae6b10294d7334782b3797953e091 2065 science extra neobio_0.0.20030929-1.1.dsc
36a826b9f12289f45cc9562b27ca869c 3858 science extra
neobio_0.0.20030929-1.1.debian.tar.gz
6511012adb2915c935aad00b8e6d8f64 443450 science extra
neobio_0.0.20030929-1.1_all.deb
-----BEGIN PGP SIGNATURE-----
Version: GnuPG v1.4.12 (GNU/Linux)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=A/Vf
-----END PGP SIGNATURE-----
--- End Message ---
