Your message dated Tue, 21 May 2013 22:17:06 +0000
with message-id <e1ueuri-0000e3...@franck.debian.org>
and subject line Bug#707874: fixed in profnet 1.0.21-1+wheezy1
has caused the Debian Bug report #707874,
regarding profnet-isis: profisis fails because bounds-check in profnet-isis
fails
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
707874: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=707874
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: profnet-isis
Version: 1.0.21-1
Severity: grave
Tags: patch upstream
Justification: renders package unusable
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Dear Maintainer,
the example shipped with profisis fails because of a bounds-error in
profnet-isis.
profisis is not usable because of this bug. Newer versions of profnet-isis are
fixed.
The version in Wheezy is affected only.
- -- System Information:
Debian Release: 7.0
APT prefers stable
APT policy: (990, 'stable'), (500, 'testing')
Architecture: amd64 (x86_64)
Kernel: Linux 3.2.0-4-amd64 (SMP w/12 CPU cores)
Locale: LANG=en_US.UTF8, LC_CTYPE=en_US.UTF8 (charmap=UTF-8) (ignored: LC_ALL
set to en_US.UTF8)
Shell: /bin/sh linked to /bin/bash
Versions of packages profnet-isis depends on:
ii libc6 2.13-38
ii libgcc1 1:4.7.2-5
ii libgfortran3 4.7.2-5
ii libquadmath0 4.7.2-5
Versions of packages profnet-isis recommends:
ii profisis 1.0.11-1
profnet-isis suggests no packages.
- -- no debconf information
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diff -Nru profnet-1.0.21/debian/changelog profnet-1.0.21/debian/changelog
--- profnet-1.0.21/debian/changelog 2011-11-28 15:48:19.000000000 +0100
+++ profnet-1.0.21/debian/changelog 2013-05-11 23:02:09.000000000 +0200
@@ -1,3 +1,12 @@
+profnet (1.0.21-2) stable; urgency=low
+
+ * Fixed Fortran runtime error (Actual string length is shorter than the
+ declared one for dummy argument) in profnet-isis with a new quilt
+ patch. (Closes: #012345)
+ * Fixed Debian build issue: now builds twice in a row.
+
+ -- Laszlo Kajan <lka...@rostlab.org> Sat, 11 May 2013 22:37:45 +0200
+
profnet (1.0.21-1) unstable; urgency=low
* New upstream release
diff -Nru profnet-1.0.21/debian/patches/isis profnet-1.0.21/debian/patches/isis
--- profnet-1.0.21/debian/patches/isis 1970-01-01 01:00:00.000000000 +0100
+++ profnet-1.0.21/debian/patches/isis 2013-05-11 22:29:48.000000000 +0200
@@ -0,0 +1,23 @@
+--- a/isis.patch
++++ b/isis.patch
+@@ -1,14 +1,18 @@
+ diff -ruN -x '.*.swp' -x 'profnet*' -x .svn src/Makefile isis_dir/Makefile
+ --- src/Makefile 2010-02-10 17:55:33.923514458 +0100
+ +++ isis_dir/Makefile 2010-02-26 11:22:10.199787414 +0100
+-@@ -1,6 +1,6 @@
++@@ -1,9 +1,9 @@
+ #=====================================================================
+ F77 = gfortran
+ -BIN = profnet_prof
+ +BIN = profnet_isis
+ #=====================================================================
+ ARCH = LINUX
+- FFLAGS := -O3 -fbounds-check -Wuninitialized
++-FFLAGS := -O3 -fbounds-check -Wuninitialized
+++FFLAGS := -O3 -Wuninitialized
++ FFLAGS := $(FFLAGS) -Wall -Wno-unused
++ #=====================================================================
++ NN_OBJS := prof.f lib-prof.f lib-sys-$(ARCH).f
+ diff -ruN -x '.*.swp' -x 'profnet*' -x .svn src/profPar.f isis_dir/profPar.f
+ --- src/profPar.f 2010-02-23 10:17:25.315661972 +0100
+ +++ isis_dir/profPar.f 2010-02-26 11:20:32.863648133 +0100
diff -Nru profnet-1.0.21/debian/patches/series profnet-1.0.21/debian/patches/series
--- profnet-1.0.21/debian/patches/series 2011-06-14 19:10:14.000000000 +0200
+++ profnet-1.0.21/debian/patches/series 2013-05-11 22:48:17.000000000 +0200
@@ -0,0 +1 @@
+isis
diff -Nru profnet-1.0.21/debian/rules profnet-1.0.21/debian/rules
--- profnet-1.0.21/debian/rules 2011-06-21 14:57:39.000000000 +0200
+++ profnet-1.0.21/debian/rules 2013-05-11 22:49:59.000000000 +0200
@@ -32,7 +32,7 @@
rm -f build-stamp configure-stamp
# Add here commands to clean up after the build process.
- $(MAKE) clean
+ $(MAKE) distclean
dh_clean
diff -Nru profnet-1.0.21/debian/changelog profnet-1.0.21/debian/changelog
--- profnet-1.0.21/debian/changelog 2011-11-28 15:48:19.000000000 +0100
+++ profnet-1.0.21/debian/changelog 2013-05-11 23:02:09.000000000 +0200
@@ -1,3 +1,12 @@
+profnet (1.0.21-2) stable; urgency=low
+
+ * Fixed Fortran runtime error (Actual string length is shorter than the
+ declared one for dummy argument) in profnet-isis with a new quilt
+ patch. (Closes: #012345)
+ * Fixed Debian build issue: now builds twice in a row.
+
+ -- Laszlo Kajan <lka...@rostlab.org> Sat, 11 May 2013 22:37:45 +0200
+
profnet (1.0.21-1) unstable; urgency=low
* New upstream release
diff -Nru profnet-1.0.21/debian/patches/isis profnet-1.0.21/debian/patches/isis
--- profnet-1.0.21/debian/patches/isis 1970-01-01 01:00:00.000000000 +0100
+++ profnet-1.0.21/debian/patches/isis 2013-05-11 22:29:48.000000000 +0200
@@ -0,0 +1,23 @@
+--- a/isis.patch
++++ b/isis.patch
+@@ -1,14 +1,18 @@
+ diff -ruN -x '.*.swp' -x 'profnet*' -x .svn src/Makefile isis_dir/Makefile
+ --- src/Makefile 2010-02-10 17:55:33.923514458 +0100
+ +++ isis_dir/Makefile 2010-02-26 11:22:10.199787414 +0100
+-@@ -1,6 +1,6 @@
++@@ -1,9 +1,9 @@
+ #=====================================================================
+ F77 = gfortran
+ -BIN = profnet_prof
+ +BIN = profnet_isis
+ #=====================================================================
+ ARCH = LINUX
+- FFLAGS := -O3 -fbounds-check -Wuninitialized
++-FFLAGS := -O3 -fbounds-check -Wuninitialized
+++FFLAGS := -O3 -Wuninitialized
++ FFLAGS := $(FFLAGS) -Wall -Wno-unused
++ #=====================================================================
++ NN_OBJS := prof.f lib-prof.f lib-sys-$(ARCH).f
+ diff -ruN -x '.*.swp' -x 'profnet*' -x .svn src/profPar.f isis_dir/profPar.f
+ --- src/profPar.f 2010-02-23 10:17:25.315661972 +0100
+ +++ isis_dir/profPar.f 2010-02-26 11:20:32.863648133 +0100
diff -Nru profnet-1.0.21/debian/patches/series profnet-1.0.21/debian/patches/series
--- profnet-1.0.21/debian/patches/series 2011-06-14 19:10:14.000000000 +0200
+++ profnet-1.0.21/debian/patches/series 2013-05-11 22:48:17.000000000 +0200
@@ -0,0 +1 @@
+isis
diff -Nru profnet-1.0.21/debian/rules profnet-1.0.21/debian/rules
--- profnet-1.0.21/debian/rules 2011-06-21 14:57:39.000000000 +0200
+++ profnet-1.0.21/debian/rules 2013-05-11 22:49:59.000000000 +0200
@@ -32,7 +32,7 @@
rm -f build-stamp configure-stamp
# Add here commands to clean up after the build process.
- $(MAKE) clean
+ $(MAKE) distclean
dh_clean
--- End Message ---
--- Begin Message ---
Source: profnet
Source-Version: 1.0.21-1+wheezy1
We believe that the bug you reported is fixed in the latest version of
profnet, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 707...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Laszlo Kajan <lka...@rostlab.org> (supplier of updated profnet package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Format: 1.8
Date: Sat, 11 May 2013 22:37:45 +0200
Source: profnet
Binary: profnet-bval profnet-chop profnet-con profnet-isis profnet-md
profnet-norsnet profnet-prof profnet-snapfun profphd-net profnet-dbg
Architecture: source amd64
Version: 1.0.21-1+wheezy1
Distribution: stable-proposed-updates
Urgency: low
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Laszlo Kajan <lka...@rostlab.org>
Description:
profnet-bval - neural network architecture for profbval
profnet-chop - neural network architecture for profchop
profnet-con - neural network architecture for profcon
profnet-dbg - debug files for profnet packages
profnet-isis - neural network architecture for profisis
profnet-md - neural network architecture for metadisorder
profnet-norsnet - neural network architecture for norsnet
profnet-prof - neural network architecture for profacc
profnet-snapfun - neural network architecture for snapfun
profphd-net - neural network architecture for profphd
Closes: 707874
Changes:
profnet (1.0.21-1+wheezy1) stable-proposed-updates; urgency=low
.
* Fixed Fortran runtime error (Actual string length is shorter than the
declared one for dummy argument) in profnet-isis with a new quilt
patch. (Closes: #707874)
* Fixed Debian build issue: now builds twice in a row.
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profnet-con_1.0.21-1+wheezy1_amd64.deb
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