I also have the same problem. Log:
$ cat x.fq
@C17VNACXX121020:6:1101:10000:52894/2
AGACCTCGCTACCCGCCAGCGGGGA
+
CCCFFFFFHHGHHJJJJJJJJJJJA
$ fastqc x.fq
Started analysis of x.fq
Analysis complete for x.fq
Failed to process file x.fq
java.lang.NullPointerException
at
uk.ac.babraham.FastQC.Report.HTMLReportArchive.startDocument(HTMLReportArchive.java:170)
at
uk.ac.babraham.FastQC.Report.HTMLReportArchive.<init>(HTMLReportArchive.java:60)
at
uk.ac.babraham.FastQC.Analysis.OfflineRunner.analysisComplete(OfflineRunner.java:157)
at
uk.ac.babraham.FastQC.Analysis.AnalysisRunner.run(AnalysisRunner.java:108)
at java.lang.Thread.run(Thread.java:722)
$ fastqc -version
FastQC v0.10.1
---
Best regards,
Alexey Sergushichev,
University ITMO, St. Petersburg, Russia
