Could you check that your picard-Tools package is correctly patched:
--- a/build.xml
+++ b/build.xml
@@ -23,7 +23,7 @@
~ THE SOFTWARE.
-->
-<project name="picard-public" basedir="." default="all">
+<project name="picard-public" basedir="." default="jar">
<property name="src" value="src/java"/>
<property name="src.scripts" value="src/scripts"/>
@@ -63,6 +63,9 @@
<fileset dir="${lib}">
<include name="**/*.jar"/>
</fileset>
+ <pathelement path="/usr/share/java/testng.jar"/>
+ <pathelement path="/usr/share/java/snappy1.0.3-java.jar"/>
+ <pathelement path="/usr/share/java/jbzip2.jar"/>
</path>
and that file /usr/share/java/snappy1.0.3-java.jar (symlink to maven-repo)
is present with original libsnappy package ?
After my tests, everything looks fine on Debian side.
Thanks
Olivier