Your message dated Fri, 30 Nov 2012 18:02:53 +0000
with message-id <e1teuvn-0007zz...@franck.debian.org>
and subject line Bug#692937: fixed in openmpi1.6 1.6.3-3
has caused the Debian Bug report #692937,
regarding openmpi1.6-doc and mpich2-doc: error when trying to install together
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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immediately.)
--
692937: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=692937
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: mpich2-doc,openmpi1.6-doc
Version: mpich2-doc/1.4.01-4
Version: openmpi1.6-doc/1.6.3-2
Severity: serious
User: trei...@debian.org
Usertags: edos-file-overwrite
Date: 2012-11-11
Architecture: amd64
Distribution: sid
Hi,
automatic installation tests of packages that share a file and at the
same time do not conflict by their package dependency relationships has
detected the following problem:
WARNING: The following packages cannot be authenticated!
mpich2-doc openmpi1.6-doc
Authentication warning overridden.
Can not write log, openpty() failed (/dev/pts not mounted?)
Selecting previously unselected package mpich2-doc.
(Reading database ... 10756 files and directories currently installed.)
Unpacking mpich2-doc (from .../mpich2-doc_1.4.1-4_all.deb) ...
Selecting previously unselected package openmpi1.6-doc.
Unpacking openmpi1.6-doc (from .../openmpi1.6-doc_1.6.3-2_all.deb) ...
dpkg: error processing /var/cache/apt/archives/openmpi1.6-doc_1.6.3-2_all.deb
(--unpack):
trying to overwrite '/usr/share/man/man3/MPI_Testany.3.gz', which is also in
package mpich2-doc 1.4.1-4
dpkg-deb: error: subprocess paste was killed by signal (Broken pipe)
Processing triggers for man-db ...
Errors were encountered while processing:
/var/cache/apt/archives/openmpi1.6-doc_1.6.3-2_all.deb
E: Sub-process /usr/bin/dpkg returned an error code (1)
This is a serious bug as it makes installation fail, and violates
sections 7.6.1 and 10.1 of the policy. An optimal solution would
consist in only one of the packages installing that file, and renaming
or removing the file in the other package. Depending on the
circumstances you might also consider Replace relations or file
diversions. If the conflicting situation cannot be resolved then, as a
last resort, the two packages have to declare a mutual
Conflict. Please take into account that Replaces, Conflicts and
diversions should only be used when packages provide different
implementations for the same functionality.
Here is a list of files that are known to be shared by both packages
(according to the Contents file for sid/amd64, which may be
slightly out of sync):
/usr/share/man/man3/MPI_Abort.3.gz
/usr/share/man/man3/MPI_Accumulate.3.gz
/usr/share/man/man3/MPI_Add_error_class.3.gz
/usr/share/man/man3/MPI_Add_error_code.3.gz
/usr/share/man/man3/MPI_Add_error_string.3.gz
/usr/share/man/man3/MPI_Address.3.gz
/usr/share/man/man3/MPI_Allgather.3.gz
/usr/share/man/man3/MPI_Allgatherv.3.gz
/usr/share/man/man3/MPI_Alloc_mem.3.gz
/usr/share/man/man3/MPI_Allreduce.3.gz
/usr/share/man/man3/MPI_Alltoall.3.gz
/usr/share/man/man3/MPI_Alltoallv.3.gz
/usr/share/man/man3/MPI_Alltoallw.3.gz
/usr/share/man/man3/MPI_Attr_delete.3.gz
/usr/share/man/man3/MPI_Attr_get.3.gz
/usr/share/man/man3/MPI_Attr_put.3.gz
/usr/share/man/man3/MPI_Barrier.3.gz
/usr/share/man/man3/MPI_Bcast.3.gz
/usr/share/man/man3/MPI_Bsend.3.gz
/usr/share/man/man3/MPI_Bsend_init.3.gz
/usr/share/man/man3/MPI_Buffer_attach.3.gz
/usr/share/man/man3/MPI_Buffer_detach.3.gz
/usr/share/man/man3/MPI_Cancel.3.gz
/usr/share/man/man3/MPI_Cart_coords.3.gz
/usr/share/man/man3/MPI_Cart_create.3.gz
/usr/share/man/man3/MPI_Cart_get.3.gz
/usr/share/man/man3/MPI_Cart_map.3.gz
/usr/share/man/man3/MPI_Cart_rank.3.gz
/usr/share/man/man3/MPI_Cart_shift.3.gz
/usr/share/man/man3/MPI_Cart_sub.3.gz
/usr/share/man/man3/MPI_Cartdim_get.3.gz
/usr/share/man/man3/MPI_Close_port.3.gz
/usr/share/man/man3/MPI_Comm_call_errhandler.3.gz
/usr/share/man/man3/MPI_Comm_compare.3.gz
/usr/share/man/man3/MPI_Comm_connect.3.gz
/usr/share/man/man3/MPI_Comm_create.3.gz
/usr/share/man/man3/MPI_Comm_create_errhandler.3.gz
/usr/share/man/man3/MPI_Comm_create_keyval.3.gz
/usr/share/man/man3/MPI_Comm_delete_attr.3.gz
/usr/share/man/man3/MPI_Comm_disconnect.3.gz
/usr/share/man/man3/MPI_Comm_dup.3.gz
/usr/share/man/man3/MPI_Comm_free.3.gz
/usr/share/man/man3/MPI_Comm_free_keyval.3.gz
/usr/share/man/man3/MPI_Comm_get_attr.3.gz
/usr/share/man/man3/MPI_Comm_get_errhandler.3.gz
/usr/share/man/man3/MPI_Comm_get_name.3.gz
/usr/share/man/man3/MPI_Comm_get_parent.3.gz
/usr/share/man/man3/MPI_Comm_group.3.gz
/usr/share/man/man3/MPI_Comm_join.3.gz
/usr/share/man/man3/MPI_Comm_rank.3.gz
/usr/share/man/man3/MPI_Comm_remote_group.3.gz
/usr/share/man/man3/MPI_Comm_remote_size.3.gz
/usr/share/man/man3/MPI_Comm_set_attr.3.gz
/usr/share/man/man3/MPI_Comm_set_errhandler.3.gz
/usr/share/man/man3/MPI_Comm_set_name.3.gz
/usr/share/man/man3/MPI_Comm_size.3.gz
/usr/share/man/man3/MPI_Comm_spawn.3.gz
/usr/share/man/man3/MPI_Comm_spawn_multiple.3.gz
/usr/share/man/man3/MPI_Comm_split.3.gz
/usr/share/man/man3/MPI_Comm_test_inter.3.gz
/usr/share/man/man3/MPI_Dims_create.3.gz
/usr/share/man/man3/MPI_Errhandler_create.3.gz
/usr/share/man/man3/MPI_Errhandler_free.3.gz
/usr/share/man/man3/MPI_Errhandler_get.3.gz
/usr/share/man/man3/MPI_Errhandler_set.3.gz
/usr/share/man/man3/MPI_Error_class.3.gz
/usr/share/man/man3/MPI_Error_string.3.gz
/usr/share/man/man3/MPI_Exscan.3.gz
/usr/share/man/man3/MPI_File_c2f.3.gz
/usr/share/man/man3/MPI_File_call_errhandler.3.gz
/usr/share/man/man3/MPI_File_close.3.gz
/usr/share/man/man3/MPI_File_create_errhandler.3.gz
/usr/share/man/man3/MPI_File_delete.3.gz
/usr/share/man/man3/MPI_File_f2c.3.gz
/usr/share/man/man3/MPI_File_get_amode.3.gz
/usr/share/man/man3/MPI_File_get_atomicity.3.gz
/usr/share/man/man3/MPI_File_get_byte_offset.3.gz
/usr/share/man/man3/MPI_File_get_errhandler.3.gz
/usr/share/man/man3/MPI_File_get_group.3.gz
/usr/share/man/man3/MPI_File_get_info.3.gz
/usr/share/man/man3/MPI_File_get_position.3.gz
/usr/share/man/man3/MPI_File_get_position_shared.3.gz
/usr/share/man/man3/MPI_File_get_size.3.gz
/usr/share/man/man3/MPI_File_get_type_extent.3.gz
/usr/share/man/man3/MPI_File_get_view.3.gz
/usr/share/man/man3/MPI_File_iread.3.gz
/usr/share/man/man3/MPI_File_iread_at.3.gz
/usr/share/man/man3/MPI_File_iread_shared.3.gz
/usr/share/man/man3/MPI_File_iwrite.3.gz
/usr/share/man/man3/MPI_File_iwrite_at.3.gz
/usr/share/man/man3/MPI_File_iwrite_shared.3.gz
/usr/share/man/man3/MPI_File_open.3.gz
/usr/share/man/man3/MPI_File_preallocate.3.gz
/usr/share/man/man3/MPI_File_read.3.gz
/usr/share/man/man3/MPI_File_read_all.3.gz
/usr/share/man/man3/MPI_File_read_all_begin.3.gz
/usr/share/man/man3/MPI_File_read_all_end.3.gz
/usr/share/man/man3/MPI_File_read_at.3.gz
/usr/share/man/man3/MPI_File_read_at_all.3.gz
/usr/share/man/man3/MPI_File_read_at_all_begin.3.gz
/usr/share/man/man3/MPI_File_read_at_all_end.3.gz
/usr/share/man/man3/MPI_File_read_ordered.3.gz
/usr/share/man/man3/MPI_File_read_ordered_begin.3.gz
/usr/share/man/man3/MPI_File_read_ordered_end.3.gz
/usr/share/man/man3/MPI_File_read_shared.3.gz
/usr/share/man/man3/MPI_File_seek.3.gz
/usr/share/man/man3/MPI_File_seek_shared.3.gz
/usr/share/man/man3/MPI_File_set_atomicity.3.gz
/usr/share/man/man3/MPI_File_set_errhandler.3.gz
/usr/share/man/man3/MPI_File_set_info.3.gz
/usr/share/man/man3/MPI_File_set_size.3.gz
/usr/share/man/man3/MPI_File_set_view.3.gz
/usr/share/man/man3/MPI_File_sync.3.gz
/usr/share/man/man3/MPI_File_write.3.gz
/usr/share/man/man3/MPI_File_write_all.3.gz
/usr/share/man/man3/MPI_File_write_all_begin.3.gz
/usr/share/man/man3/MPI_File_write_all_end.3.gz
/usr/share/man/man3/MPI_File_write_at.3.gz
/usr/share/man/man3/MPI_File_write_at_all.3.gz
/usr/share/man/man3/MPI_File_write_at_all_begin.3.gz
/usr/share/man/man3/MPI_File_write_at_all_end.3.gz
/usr/share/man/man3/MPI_File_write_ordered.3.gz
/usr/share/man/man3/MPI_File_write_ordered_begin.3.gz
/usr/share/man/man3/MPI_File_write_ordered_end.3.gz
/usr/share/man/man3/MPI_File_write_shared.3.gz
/usr/share/man/man3/MPI_Finalize.3.gz
/usr/share/man/man3/MPI_Finalized.3.gz
/usr/share/man/man3/MPI_Free_mem.3.gz
/usr/share/man/man3/MPI_Gather.3.gz
/usr/share/man/man3/MPI_Gatherv.3.gz
/usr/share/man/man3/MPI_Get.3.gz
/usr/share/man/man3/MPI_Get_address.3.gz
/usr/share/man/man3/MPI_Get_count.3.gz
/usr/share/man/man3/MPI_Get_elements.3.gz
/usr/share/man/man3/MPI_Get_processor_name.3.gz
/usr/share/man/man3/MPI_Get_version.3.gz
/usr/share/man/man3/MPI_Graph_create.3.gz
/usr/share/man/man3/MPI_Graph_get.3.gz
/usr/share/man/man3/MPI_Graph_map.3.gz
/usr/share/man/man3/MPI_Graph_neighbors.3.gz
/usr/share/man/man3/MPI_Graph_neighbors_count.3.gz
/usr/share/man/man3/MPI_Graphdims_get.3.gz
/usr/share/man/man3/MPI_Grequest_complete.3.gz
/usr/share/man/man3/MPI_Grequest_start.3.gz
/usr/share/man/man3/MPI_Group_compare.3.gz
/usr/share/man/man3/MPI_Group_difference.3.gz
/usr/share/man/man3/MPI_Group_excl.3.gz
/usr/share/man/man3/MPI_Group_free.3.gz
/usr/share/man/man3/MPI_Group_incl.3.gz
/usr/share/man/man3/MPI_Group_intersection.3.gz
/usr/share/man/man3/MPI_Group_range_excl.3.gz
/usr/share/man/man3/MPI_Group_range_incl.3.gz
/usr/share/man/man3/MPI_Group_rank.3.gz
/usr/share/man/man3/MPI_Group_size.3.gz
/usr/share/man/man3/MPI_Group_translate_ranks.3.gz
/usr/share/man/man3/MPI_Group_union.3.gz
/usr/share/man/man3/MPI_Ibsend.3.gz
/usr/share/man/man3/MPI_Info_create.3.gz
/usr/share/man/man3/MPI_Info_delete.3.gz
/usr/share/man/man3/MPI_Info_dup.3.gz
/usr/share/man/man3/MPI_Info_free.3.gz
/usr/share/man/man3/MPI_Info_get.3.gz
/usr/share/man/man3/MPI_Info_get_nkeys.3.gz
/usr/share/man/man3/MPI_Info_get_nthkey.3.gz
/usr/share/man/man3/MPI_Info_get_valuelen.3.gz
/usr/share/man/man3/MPI_Info_set.3.gz
/usr/share/man/man3/MPI_Init.3.gz
/usr/share/man/man3/MPI_Init_thread.3.gz
/usr/share/man/man3/MPI_Initialized.3.gz
/usr/share/man/man3/MPI_Intercomm_create.3.gz
/usr/share/man/man3/MPI_Intercomm_merge.3.gz
/usr/share/man/man3/MPI_Iprobe.3.gz
/usr/share/man/man3/MPI_Irecv.3.gz
/usr/share/man/man3/MPI_Irsend.3.gz
/usr/share/man/man3/MPI_Is_thread_main.3.gz
/usr/share/man/man3/MPI_Isend.3.gz
/usr/share/man/man3/MPI_Issend.3.gz
/usr/share/man/man3/MPI_Keyval_create.3.gz
/usr/share/man/man3/MPI_Keyval_free.3.gz
/usr/share/man/man3/MPI_Lookup_name.3.gz
/usr/share/man/man3/MPI_Op_create.3.gz
/usr/share/man/man3/MPI_Op_free.3.gz
/usr/share/man/man3/MPI_Open_port.3.gz
/usr/share/man/man3/MPI_Pack.3.gz
/usr/share/man/man3/MPI_Pack_external.3.gz
/usr/share/man/man3/MPI_Pack_external_size.3.gz
/usr/share/man/man3/MPI_Pack_size.3.gz
/usr/share/man/man3/MPI_Pcontrol.3.gz
/usr/share/man/man3/MPI_Probe.3.gz
/usr/share/man/man3/MPI_Publish_name.3.gz
/usr/share/man/man3/MPI_Put.3.gz
/usr/share/man/man3/MPI_Query_thread.3.gz
/usr/share/man/man3/MPI_Recv.3.gz
/usr/share/man/man3/MPI_Recv_init.3.gz
/usr/share/man/man3/MPI_Reduce.3.gz
/usr/share/man/man3/MPI_Reduce_local.3.gz
/usr/share/man/man3/MPI_Reduce_scatter.3.gz
/usr/share/man/man3/MPI_Register_datarep.3.gz
/usr/share/man/man3/MPI_Request_free.3.gz
/usr/share/man/man3/MPI_Request_get_status.3.gz
/usr/share/man/man3/MPI_Rsend.3.gz
/usr/share/man/man3/MPI_Rsend_init.3.gz
/usr/share/man/man3/MPI_Scan.3.gz
/usr/share/man/man3/MPI_Scatter.3.gz
/usr/share/man/man3/MPI_Scatterv.3.gz
/usr/share/man/man3/MPI_Send.3.gz
/usr/share/man/man3/MPI_Send_init.3.gz
/usr/share/man/man3/MPI_Sendrecv.3.gz
/usr/share/man/man3/MPI_Sendrecv_replace.3.gz
/usr/share/man/man3/MPI_Ssend.3.gz
/usr/share/man/man3/MPI_Ssend_init.3.gz
/usr/share/man/man3/MPI_Start.3.gz
/usr/share/man/man3/MPI_Startall.3.gz
/usr/share/man/man3/MPI_Status_set_cancelled.3.gz
/usr/share/man/man3/MPI_Status_set_elements.3.gz
/usr/share/man/man3/MPI_Test.3.gz
/usr/share/man/man3/MPI_Test_cancelled.3.gz
/usr/share/man/man3/MPI_Testall.3.gz
/usr/share/man/man3/MPI_Testany.3.gz
/usr/share/man/man3/MPI_Testsome.3.gz
/usr/share/man/man3/MPI_Topo_test.3.gz
/usr/share/man/man3/MPI_Type_commit.3.gz
/usr/share/man/man3/MPI_Type_contiguous.3.gz
/usr/share/man/man3/MPI_Type_create_darray.3.gz
/usr/share/man/man3/MPI_Type_create_hindexed.3.gz
/usr/share/man/man3/MPI_Type_create_hvector.3.gz
/usr/share/man/man3/MPI_Type_create_indexed_block.3.gz
/usr/share/man/man3/MPI_Type_create_keyval.3.gz
/usr/share/man/man3/MPI_Type_create_resized.3.gz
/usr/share/man/man3/MPI_Type_create_struct.3.gz
/usr/share/man/man3/MPI_Type_create_subarray.3.gz
/usr/share/man/man3/MPI_Type_delete_attr.3.gz
/usr/share/man/man3/MPI_Type_dup.3.gz
/usr/share/man/man3/MPI_Type_extent.3.gz
/usr/share/man/man3/MPI_Type_free.3.gz
/usr/share/man/man3/MPI_Type_free_keyval.3.gz
/usr/share/man/man3/MPI_Type_get_attr.3.gz
/usr/share/man/man3/MPI_Type_get_contents.3.gz
/usr/share/man/man3/MPI_Type_get_envelope.3.gz
/usr/share/man/man3/MPI_Type_get_extent.3.gz
/usr/share/man/man3/MPI_Type_get_name.3.gz
/usr/share/man/man3/MPI_Type_get_true_extent.3.gz
/usr/share/man/man3/MPI_Type_hindexed.3.gz
/usr/share/man/man3/MPI_Type_hvector.3.gz
/usr/share/man/man3/MPI_Type_indexed.3.gz
/usr/share/man/man3/MPI_Type_lb.3.gz
/usr/share/man/man3/MPI_Type_match_size.3.gz
/usr/share/man/man3/MPI_Type_set_attr.3.gz
/usr/share/man/man3/MPI_Type_set_name.3.gz
/usr/share/man/man3/MPI_Type_size.3.gz
/usr/share/man/man3/MPI_Type_struct.3.gz
/usr/share/man/man3/MPI_Type_ub.3.gz
/usr/share/man/man3/MPI_Type_vector.3.gz
/usr/share/man/man3/MPI_Unpack.3.gz
/usr/share/man/man3/MPI_Unpack_external.3.gz
/usr/share/man/man3/MPI_Unpublish_name.3.gz
/usr/share/man/man3/MPI_Wait.3.gz
/usr/share/man/man3/MPI_Waitall.3.gz
/usr/share/man/man3/MPI_Waitany.3.gz
/usr/share/man/man3/MPI_Waitsome.3.gz
/usr/share/man/man3/MPI_Win_call_errhandler.3.gz
/usr/share/man/man3/MPI_Win_complete.3.gz
/usr/share/man/man3/MPI_Win_create.3.gz
/usr/share/man/man3/MPI_Win_create_errhandler.3.gz
/usr/share/man/man3/MPI_Win_create_keyval.3.gz
/usr/share/man/man3/MPI_Win_delete_attr.3.gz
/usr/share/man/man3/MPI_Win_fence.3.gz
/usr/share/man/man3/MPI_Win_free.3.gz
/usr/share/man/man3/MPI_Win_free_keyval.3.gz
/usr/share/man/man3/MPI_Win_get_attr.3.gz
/usr/share/man/man3/MPI_Win_get_errhandler.3.gz
/usr/share/man/man3/MPI_Win_get_group.3.gz
/usr/share/man/man3/MPI_Win_get_name.3.gz
/usr/share/man/man3/MPI_Win_lock.3.gz
/usr/share/man/man3/MPI_Win_post.3.gz
/usr/share/man/man3/MPI_Win_set_attr.3.gz
/usr/share/man/man3/MPI_Win_set_errhandler.3.gz
/usr/share/man/man3/MPI_Win_set_name.3.gz
/usr/share/man/man3/MPI_Win_start.3.gz
/usr/share/man/man3/MPI_Win_test.3.gz
/usr/share/man/man3/MPI_Win_unlock.3.gz
/usr/share/man/man3/MPI_Win_wait.3.gz
/usr/share/man/man3/MPI_Wtick.3.gz
/usr/share/man/man3/MPI_Wtime.3.gz
This bug has been filed against both packages. If you, the maintainers of
the two packages in question, have agreed on which of the packages will
resolve the problem please reassign the bug to that package. You may then
also register in the BTS that the other package is affected by the bug.
-Ralf.
PS: for more information about the detection of file overwrite errors
of this kind see http://edos.debian.net/file-overwrites/.
--- End Message ---
--- Begin Message ---
Source: openmpi1.6
Source-Version: 1.6.3-3
We believe that the bug you reported is fixed in the latest version of
openmpi1.6, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 692...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Sylvestre Ledru <sylves...@debian.org> (supplier of updated openmpi1.6 package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Format: 1.8
Date: Fri, 16 Nov 2012 17:42:56 +0100
Source: openmpi1.6
Binary: openmpi1.6-bin libopenmpi1.6-dev libopenmpi1.6 openmpi1.6-common
openmpi1.6-doc libopenmpi1.6-dbg openmpi1.6-checkpoint
Architecture: source amd64 all
Version: 1.6.3-3
Distribution: unstable
Urgency: low
Maintainer: Debian Open MPI Maintainers
<pkg-openmpi-maintain...@lists.alioth.debian.org>
Changed-By: Sylvestre Ledru <sylves...@debian.org>
Description:
libopenmpi1.6 - high performance message passing library -- shared library
libopenmpi1.6-dbg - high performance message passing library -- debug library
libopenmpi1.6-dev - high performance message passing library -- header files
openmpi1.6-bin - high performance message passing library -- binaries
openmpi1.6-checkpoint - high performance message passing library -- checkpoint
support
openmpi1.6-common - high performance message passing library -- common files
openmpi1.6-doc - high performance message passing library -- man pages
Closes: 692937
Changes:
openmpi1.6 (1.6.3-3) unstable; urgency=low
.
* Rename manpages to avoid conflicts with mpich2-doc (Closes: #692937)
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