Hi,
could you give some slight hint how to cope with this problem?
Many thanks
Andreas.
On Wed, May 16, 2012 at 04:40:20PM +0200, Christoph Egger wrote:
> Package: src:bowtie2
> Version: 2.0.0-beta6-1
> Severity: serious
> Tags: sid wheezy
> User: debian-...@lists.debian.org
> Usertags: kfreebsd
> X-Debbugs-Cc: debian-...@lists.debian.org
> Justification: fails to build from source (but built successfully in the past)
>
> Hi!
>
> Your package failed to build on the {hurd,kfreebsd}-i386 buildds:
>
> /usr/bin/g++ -O3 -funroll-loops -g3 -DCOMPILER_OPTIONS="\"-O3
> -funroll-loops -g3 \"" \
> -fno-strict-aliasing -DBOWTIE2_VERSION="\"`cat VERSION`\""
> -DBUILD_HOST="\"`hostname`\"" -DBUILD_TIME="\"`date`\""
> -DCOMPILER_VERSION="\"`/usr/bin/g++ -v 2>&1 | tail -1`\"" -D_LARGEFILE_SOURCE
> -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -DBOWTIE_PTHREADS -DPREFETCH_LOCALITY=2
> -DBOWTIE_MM -DBOWTIE2 -DNDEBUG -Wall \
> \
> -o bowtie2-align bt2_search.cpp \
> ccnt_lut.cpp ref_read.cpp alphabet.cpp shmem.cpp edit.cpp
> bt2_idx.cpp bt2_io.cpp bt2_util.cpp reference.cpp ds.cpp multikey_qsort.cpp
> limit.cpp qual.cpp pat.cpp sam.cpp read_qseq.cpp aligner_seed_policy.cpp
> aligner_seed.cpp aligner_sw.cpp aligner_sw_driver.cpp aligner_cache.cpp
> aligner_result.cpp ref_coord.cpp mask.cpp pe.cpp aln_sink.cpp dp_framer.cpp
> scoring.cpp presets.cpp unique.cpp aligner_bt.cpp sse_util.cpp
> aligner_swsse.cpp outq.cpp aligner_swsse_loc_i16.cpp aligner_swsse_ee_i16.cpp
> aligner_swsse_loc_u8.cpp aligner_swsse_ee_u8.cpp bowtie_main.cpp \
> -lpthread
> In file included from aligner_sw.h:72:0,
> from bt2_search.cpp:47:
> [...]
>
> Full build log at
> https://buildd.debian.org/status/fetch.php?pkg=bowtie2&arch=kfreebsd-i386&ver=2.0.0-beta6-1&stamp=1337068947
>
> Regards
>
> Christoph
>
> If you have further questions please mail debian-...@lists.debian.org
>
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